These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 26397960)

  • 21. Estimating empirical codon hidden Markov models.
    De Maio N; Holmes I; Schlötterer C; Kosiol C
    Mol Biol Evol; 2013 Mar; 30(3):725-36. PubMed ID: 23188590
    [TBL] [Abstract][Full Text] [Related]  

  • 22. FactorialHMM: fast and exact inference in factorial hidden Markov models.
    Schweiger R; Erlich Y; Carmi S
    Bioinformatics; 2019 Jun; 35(12):2162-2164. PubMed ID: 30445428
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Phylotyper: in silico predictor of gene subtypes.
    Whiteside MD; Gannon VPJ; Laing CR
    Bioinformatics; 2017 Nov; 33(22):3638-3641. PubMed ID: 29036291
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Empirical models for substitution in ribosomal RNA.
    Smith AD; Lui TW; Tillier ER
    Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Phylogenetics, likelihood, evolution and complexity.
    de Koning AP; Gu W; Castoe TA; Pollock DD
    Bioinformatics; 2012 Nov; 28(22):2989-90. PubMed ID: 22976081
    [TBL] [Abstract][Full Text] [Related]  

  • 26.
    Yuan F; Nguyen H; Graur D
    Genes (Basel); 2019 Feb; 10(3):. PubMed ID: 30813627
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
    Rambaut A; Grassly NC
    Comput Appl Biosci; 1997 Jun; 13(3):235-8. PubMed ID: 9183526
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Phylogenetic inference: how much evolutionary history is knowable?
    Lake JA
    Mol Biol Evol; 1997 Mar; 14(3):213-9. PubMed ID: 9066789
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Jump-Chain Simulation of Markov Substitution Processes Over Phylogenies.
    Laurin-Lemay S; Dickson K; Rodrigue N
    J Mol Evol; 2022 Aug; 90(3-4):239-243. PubMed ID: 35652926
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Phylogenetic invariants for the general Markov model of sequence mutation.
    Allman ES; Rhodes JA
    Math Biosci; 2003 Dec; 186(2):113-44. PubMed ID: 14583169
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SPIn: model selection for phylogenetic mixtures via linear invariants.
    Kedzierska AM; Drton M; Guigó R; Casanellas M
    Mol Biol Evol; 2012 Mar; 29(3):929-37. PubMed ID: 22009060
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Simulating domain architecture evolution.
    Cui X; Xue Y; McCormack C; Garces A; Rachman TW; Yi Y; Stolzer M; Durand D
    Bioinformatics; 2022 Jun; 38(Suppl 1):i134-i142. PubMed ID: 35758772
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes.
    Curran DM; Gilleard JS; Wasmuth JD
    Bioinformatics; 2014 Nov; 30(22):3266-7. PubMed ID: 25115706
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PSiTE: a Phylogeny guided Simulator for Tumor Evolution.
    Yang H; Lu B; Lai LH; Lim AH; Alvarez JJS; Zhai W
    Bioinformatics; 2019 Sep; 35(17):3148-3150. PubMed ID: 30649258
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST.
    Baele G; Gill MS; Bastide P; Lemey P; Suchard MA
    Syst Biol; 2021 Jan; 70(1):181-189. PubMed ID: 32415977
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Using hidden Markov models and observed evolution to annotate viral genomes.
    McCauley S; Hein J
    Bioinformatics; 2006 Jun; 22(11):1308-16. PubMed ID: 16613911
    [TBL] [Abstract][Full Text] [Related]  

  • 37. GToTree: a user-friendly workflow for phylogenomics.
    Lee MD
    Bioinformatics; 2019 Oct; 35(20):4162-4164. PubMed ID: 30865266
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Developing a statistically powerful measure for quartet tree inference using phylogenetic identities and Markov invariants.
    Sumner JG; Taylor A; Holland BR; Jarvis PD
    J Math Biol; 2017 Dec; 75(6-7):1619-1654. PubMed ID: 28434023
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Codon substitution models based on residue similarity and their applications.
    Liu X; Liu H; Guo W; Yu K
    Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303
    [TBL] [Abstract][Full Text] [Related]  

  • 40. EggLib: processing, analysis and simulation tools for population genetics and genomics.
    De Mita S; Siol M
    BMC Genet; 2012 Apr; 13():27. PubMed ID: 22494792
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.