BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

745 related articles for article (PubMed ID: 26434730)

  • 1. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
    Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
    Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
    Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
    BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
    Myer PR; Kim M; Freetly HC; Smith TPL
    J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
    Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
    J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
    Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
    BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis.
    Whelan FJ; Surette MG
    Microbiome; 2017 Aug; 5(1):100. PubMed ID: 28807046
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
    Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
    Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
    [TBL] [Abstract][Full Text] [Related]  

  • 8. OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes.
    Yadav D; Dutta A; Mande SS
    DNA Res; 2019 Apr; 26(2):147-156. PubMed ID: 30624596
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs.
    Wei ZG; Zhang SW
    J Theor Biol; 2017 Jul; 425():80-87. PubMed ID: 28454900
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR.
    Lazarevic V; Gaïa N; Girard M; Schrenzel J
    BMC Microbiol; 2016 Apr; 16():73. PubMed ID: 27107811
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.
    Chen W; Cheng Y; Zhang C; Zhang S; Zhao H
    J Microbiol Methods; 2013 Sep; 94(3):347-55. PubMed ID: 23899776
    [TBL] [Abstract][Full Text] [Related]  

  • 12. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
    Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
    J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Processing a 16S rRNA Sequencing Dataset with the Microbiome Helper Workflow.
    Douglas GM; Comeau AM; Langille MGI
    Methods Mol Biol; 2018; 1849():131-141. PubMed ID: 30298252
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies.
    Zheng Q; Bartow-McKenney C; Meisel JS; Grice EA
    Genome Biol; 2018 Jun; 19(1):82. PubMed ID: 29950165
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Assessment of a 16S rRNA amplicon Illumina sequencing procedure for studying the microbiome of a symbiont-rich aphid genus.
    Jousselin E; Clamens AL; Galan M; Bernard M; Maman S; Gschloessl B; Duport G; Meseguer AS; Calevro F; Coeur d'acier A
    Mol Ecol Resour; 2016 May; 16(3):628-40. PubMed ID: 26458227
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
    Thorsen J; Brejnrod A; Mortensen M; Rasmussen MA; Stokholm J; Al-Soud WA; Sørensen S; Bisgaard H; Waage J
    Microbiome; 2016 Nov; 4(1):62. PubMed ID: 27884206
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
    Buetas E; Jordán-López M; López-Roldán A; D'Auria G; Martínez-Priego L; De Marco G; Carda-Diéguez M; Mira A
    BMC Genomics; 2024 Mar; 25(1):310. PubMed ID: 38528457
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
    Schloss PD
    mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An accurate and efficient experimental approach for characterization of the complex oral microbiota.
    Zheng W; Tsompana M; Ruscitto A; Sharma A; Genco R; Sun Y; Buck MJ
    Microbiome; 2015 Oct; 3():48. PubMed ID: 26437933
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
    Nguyen TD; Schmidt B; Zheng Z; Kwoh CK
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):1060-73. PubMed ID: 26451819
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 38.