933 related articles for article (PubMed ID: 26445311)
1. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
Wright ES
BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311
[TBL] [Abstract][Full Text] [Related]
2. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
3. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
4. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
5. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
6. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
7. Multiple sequence alignment based on profile alignment of intermediate sequences.
Lu Y; Sze SH
J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
[TBL] [Abstract][Full Text] [Related]
8. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
Scheeff ED; Bourne PE
BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830
[TBL] [Abstract][Full Text] [Related]
9. Clustal Omega for making accurate alignments of many protein sequences.
Sievers F; Higgins DG
Protein Sci; 2018 Jan; 27(1):135-145. PubMed ID: 28884485
[TBL] [Abstract][Full Text] [Related]
10. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
[TBL] [Abstract][Full Text] [Related]
11. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
Sauder JM; Arthur JW; Dunbrack RL
Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
[TBL] [Abstract][Full Text] [Related]
12. Protein secondary structure: entropy, correlations and prediction.
Crooks GE; Brenner SE
Bioinformatics; 2004 Jul; 20(10):1603-11. PubMed ID: 14988117
[TBL] [Abstract][Full Text] [Related]
13. Scoring profile-to-profile sequence alignments.
Wang G; Dunbrack RL
Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
[TBL] [Abstract][Full Text] [Related]
14. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
Ndhlovu A; Hazelhurst S; Durand PM
BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
[TBL] [Abstract][Full Text] [Related]
15. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
16. GLProbs: Aligning Multiple Sequences Adaptively.
Ye Y; Cheung DW; Wang Y; Yiu SM; Zhan Q; Lam TW; Ting HF
IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):67-78. PubMed ID: 26357079
[TBL] [Abstract][Full Text] [Related]
17. Variable gap penalty for protein sequence-structure alignment.
Madhusudhan MS; Marti-Renom MA; Sanchez R; Sali A
Protein Eng Des Sel; 2006 Mar; 19(3):129-33. PubMed ID: 16423846
[TBL] [Abstract][Full Text] [Related]
18. Constrained multiple sequence alignment tool development and its application to RNase family alignment.
Tang CY; Lu CL; Chang MD; Tsai YT; Sun YJ; Chao KM; Chang JM; Chiou YH; Wu CM; Chang HT; Chou WI
Proc IEEE Comput Soc Bioinform Conf; 2002; 1():127-37. PubMed ID: 15838130
[TBL] [Abstract][Full Text] [Related]
19. Development and validation of a consistency based multiple structure alignment algorithm.
Ebert J; Brutlag D
Bioinformatics; 2006 May; 22(9):1080-7. PubMed ID: 16473868
[TBL] [Abstract][Full Text] [Related]
20. Aligning protein sequences with predicted secondary structure.
Kececioglu J; Kim E; Wheeler T
J Comput Biol; 2010 Mar; 17(3):561-80. PubMed ID: 20377464
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]