These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

265 related articles for article (PubMed ID: 26447887)

  • 1. TRANSIT--A Software Tool for Himar1 TnSeq Analysis.
    DeJesus MA; Ambadipudi C; Baker R; Sassetti C; Ioerger TR
    PLoS Comput Biol; 2015 Oct; 11(10):e1004401. PubMed ID: 26447887
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis of Gene Essentiality from TnSeq Data Using Transit.
    Ioerger TR
    Methods Mol Biol; 2022; 2377():391-421. PubMed ID: 34709629
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
    Mrázek J; Xie S
    Bioinformatics; 2006 Dec; 22(24):3099-100. PubMed ID: 17095514
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prokaryotic gene prediction using GeneMark and GeneMark.hmm.
    Borodovsky M; Mills R; Besemer J; Lomsadze A
    Curr Protoc Bioinformatics; 2003 May; Chapter 4():Unit4.5. PubMed ID: 18428700
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis.
    DeJesus MA; Gerrick ER; Xu W; Park SW; Long JE; Boutte CC; Rubin EJ; Schnappinger D; Ehrt S; Fortune SM; Sassetti CM; Ioerger TR
    mBio; 2017 Jan; 8(1):. PubMed ID: 28096490
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Using RepeatMasker to identify repetitive elements in genomic sequences.
    Chen N
    Curr Protoc Bioinformatics; 2004 May; Chapter 4():Unit 4.10. PubMed ID: 18428725
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Introduction to comparing large sequence sets.
    Page RD
    Curr Protoc Bioinformatics; 2003 Feb; Chapter 10():Unit 10.1. PubMed ID: 18428691
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
    Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
    Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons.
    Ellinghaus D; Kurtz S; Willhoeft U
    BMC Bioinformatics; 2008 Jan; 9():18. PubMed ID: 18194517
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Modeling Site-Specific Nucleotide Biases Affecting Himar1 Transposon Insertion Frequencies in TnSeq Data Sets.
    Choudhery S; Brown AJ; Akusobi C; Rubin EJ; Sassetti CM; Ioerger TR
    mSystems; 2021 Oct; 6(5):e0087621. PubMed ID: 34665010
    [TBL] [Abstract][Full Text] [Related]  

  • 11. WindowMasker: window-based masker for sequenced genomes.
    Morgulis A; Gertz EM; Schäffer AA; Agarwala R
    Bioinformatics; 2006 Jan; 22(2):134-41. PubMed ID: 16287941
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CGHPRO -- a comprehensive data analysis tool for array CGH.
    Chen W; Erdogan F; Ropers HH; Lenzner S; Ullmann R
    BMC Bioinformatics; 2005 Apr; 6():85. PubMed ID: 15807904
    [TBL] [Abstract][Full Text] [Related]  

  • 13. i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles.
    Simillion C; Janssens K; Sterck L; Van de Peer Y
    Bioinformatics; 2008 Jan; 24(1):127-8. PubMed ID: 17947255
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Open source clustering software.
    de Hoon MJ; Imoto S; Nolan J; Miyano S
    Bioinformatics; 2004 Jun; 20(9):1453-4. PubMed ID: 14871861
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SciRoKo: a new tool for whole genome microsatellite search and investigation.
    Kofler R; Schlötterer C; Lelley T
    Bioinformatics; 2007 Jul; 23(13):1683-5. PubMed ID: 17463017
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Hidden Markov model web application for analysing bacterial genomotyping DNA microarray experiments.
    Newton R; Hinds J; Wernisch L
    Appl Bioinformatics; 2006; 5(4):211-8. PubMed ID: 17140267
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PREDetector: a new tool to identify regulatory elements in bacterial genomes.
    Hiard S; Marée R; Colson S; Hoskisson PA; Titgemeyer F; van Wezel GP; Joris B; Wehenkel L; Rigali S
    Biochem Biophys Res Commun; 2007 Jun; 357(4):861-4. PubMed ID: 17451648
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.
    Page AJ; Bastkowski S; Yasir M; Turner AK; Le Viet T; Savva GM; Webber MA; Charles IG
    PLoS Comput Biol; 2020 Jul; 16(7):e1007980. PubMed ID: 32678849
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage.
    Hao K; Di X; Cawley S
    Bioinformatics; 2007 Jan; 23(2):252-4. PubMed ID: 17148510
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PipMaker: a World Wide Web server for genomic sequence alignments.
    Elnitski L; Riemer C; Schwartz S; Hardison R; Miller W
    Curr Protoc Bioinformatics; 2003 Feb; Chapter 10():Unit 10.2. PubMed ID: 18428692
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.