210 related articles for article (PubMed ID: 26451676)
1. Nuclear Magnetic Resonance-Assisted Prediction of Secondary Structure for RNA: Incorporation of Direction-Dependent Chemical Shift Constraints.
Chen JL; Bellaousov S; Tubbs JD; Kennedy SD; Lopez MJ; Mathews DH; Turner DH
Biochemistry; 2015 Nov; 54(45):6769-82. PubMed ID: 26451676
[TBL] [Abstract][Full Text] [Related]
2. RNA Secondary Structure Determination by NMR.
Chen JL; Bellaousov S; Turner DH
Methods Mol Biol; 2016; 1490():177-86. PubMed ID: 27665599
[TBL] [Abstract][Full Text] [Related]
3. RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts.
Bahrami A; Clos LJ; Markley JL; Butcher SE; Eghbalnia HR
J Biomol NMR; 2012 Apr; 52(4):289-302. PubMed ID: 22359049
[TBL] [Abstract][Full Text] [Related]
4. NMR Methods for Characterization of RNA Secondary Structure.
Kennedy SD
Methods Mol Biol; 2016; 1490():253-64. PubMed ID: 27665604
[TBL] [Abstract][Full Text] [Related]
5. Structure modeling of RNA using sparse NMR constraints.
Williams B; Zhao B; Tandon A; Ding F; Weeks KM; Zhang Q; Dokholyan NV
Nucleic Acids Res; 2017 Dec; 45(22):12638-12647. PubMed ID: 29165648
[TBL] [Abstract][Full Text] [Related]
6. NMR spectroscopy of RNA duplexes containing pseudouridine in supercooled water.
Schroeder KT; Skalicky JJ; Greenbaum NL
RNA; 2005 Jul; 11(7):1012-6. PubMed ID: 15987812
[TBL] [Abstract][Full Text] [Related]
7. An RNA folding algorithm including pseudoknots based on dynamic weighted matching.
Liu H; Xu D; Shao J; Wang Y
Comput Biol Chem; 2006 Feb; 30(1):72-6. PubMed ID: 16321572
[TBL] [Abstract][Full Text] [Related]
8. Structure of an anti-HIV-1 hammerhead ribozyme complex with a 17-mer DNA substrate analog of HIV-1 gag RNA and a mechanism for the cleavage reaction: 750 MHz NMR and computer experiments.
Ojha RP; Dhingra MM; Sarma MH; Myer YP; Setlik RF; Shibata M; Kazim AL; Ornstein RL; Rein R; Turner CJ; Sarma RH
J Biomol Struct Dyn; 1997 Oct; 15(2):185-215. PubMed ID: 9399149
[TBL] [Abstract][Full Text] [Related]
9. Determination of a high precision structure of a novel protein, Linum usitatissimum trypsin inhibitor (LUTI), using computer-aided assignment of NOESY cross-peaks.
Cierpicki T; Otlewski J
J Mol Biol; 2000 Oct; 302(5):1179-92. PubMed ID: 11183783
[TBL] [Abstract][Full Text] [Related]
10. Automated and assisted RNA resonance assignment using NMR chemical shift statistics.
Aeschbacher T; Schmidt E; Blatter M; Maris C; Duss O; Allain FH; Güntert P; Schubert M
Nucleic Acids Res; 2013 Oct; 41(18):e172. PubMed ID: 23921634
[TBL] [Abstract][Full Text] [Related]
11. Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings.
Al-Hashimi HM; Gorin A; Majumdar A; Gosser Y; Patel DJ
J Mol Biol; 2002 May; 318(3):637-49. PubMed ID: 12054812
[TBL] [Abstract][Full Text] [Related]
12. DSHIFT: a web server for predicting DNA chemical shifts.
Lam SL
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W713-7. PubMed ID: 17517771
[TBL] [Abstract][Full Text] [Related]
13. Enhanced NMR signal detection of imino protons in RNA molecules containing 3' dangling nucleotides.
Amborski AN; Johnson PE
J Biomol NMR; 2008 Mar; 40(3):183-8. PubMed ID: 18273681
[TBL] [Abstract][Full Text] [Related]
14. Topology links RNA secondary structure with global conformation, dynamics, and adaptation.
Bailor MH; Sun X; Al-Hashimi HM
Science; 2010 Jan; 327(5962):202-6. PubMed ID: 20056889
[TBL] [Abstract][Full Text] [Related]
15. Solution structure and thermodynamics of a divalent metal ion binding site in an RNA pseudoknot.
Gonzalez RL; Tinoco I
J Mol Biol; 1999 Jun; 289(5):1267-82. PubMed ID: 10373367
[TBL] [Abstract][Full Text] [Related]
16. Database proton NMR chemical shifts for RNA signal assignment and validation.
Barton S; Heng X; Johnson BA; Summers MF
J Biomol NMR; 2013 Jan; 55(1):33-46. PubMed ID: 23180050
[TBL] [Abstract][Full Text] [Related]
17. NMR structure of the 101-nucleotide core encapsidation signal of the Moloney murine leukemia virus.
D'Souza V; Dey A; Habib D; Summers MF
J Mol Biol; 2004 Mar; 337(2):427-42. PubMed ID: 15003457
[TBL] [Abstract][Full Text] [Related]
18. Conjoined use of EM and NMR in RNA structure refinement.
Gong Z; Schwieters CD; Tang C
PLoS One; 2015; 10(3):e0120445. PubMed ID: 25798848
[TBL] [Abstract][Full Text] [Related]
19. RNA secondary structure prediction based on SHAPE data in helix regions.
Lotfi M; Zare-Mirakabad F; Montaseri S
J Theor Biol; 2015 Sep; 380():178-82. PubMed ID: 26037307
[TBL] [Abstract][Full Text] [Related]
20. Direct identification of base-paired RNA nucleotides by correlated chemical probing.
Krokhotin A; Mustoe AM; Weeks KM; Dokholyan NV
RNA; 2017 Jan; 23(1):6-13. PubMed ID: 27803152
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]