These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 26478722)

  • 1. Energy Minimization on Manifolds for Docking Flexible Molecules.
    Mirzaei H; Zarbafian S; Villar E; Mottarella S; Beglov D; Vajda S; Paschalidis ICh; Vakili P; Kozakov D
    J Chem Theory Comput; 2015 Mar; 11(3):1063-76. PubMed ID: 26478722
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rigid Body Energy Minimization on Manifolds for Molecular Docking.
    Mirzaei H; Beglov D; Paschalidis IC; Vajda S; Vakili P; Kozakov D
    J Chem Theory Comput; 2012 Nov; 8(11):4374-4380. PubMed ID: 23382659
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MOLS 2.0: software package for peptide modeling and protein-ligand docking.
    Paul DS; Gautham N
    J Mol Model; 2016 Oct; 22(10):239. PubMed ID: 27638416
    [TBL] [Abstract][Full Text] [Related]  

  • 4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A method for biomolecular structural recognition and docking allowing conformational flexibility.
    Sandak B; Nussinov R; Wolfson HJ
    J Comput Biol; 1998; 5(4):631-54. PubMed ID: 10072081
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An efficient molecular docking using conformational space annealing.
    Lee K; Czaplewski C; Kim SY; Lee J
    J Comput Chem; 2005 Jan; 26(1):78-87. PubMed ID: 15538770
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A new Lamarckian genetic algorithm for flexible ligand-receptor docking.
    Fuhrmann J; Rurainski A; Lenhof HP; Neumann D
    J Comput Chem; 2010 Jul; 31(9):1911-8. PubMed ID: 20082382
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SODOCK: swarm optimization for highly flexible protein-ligand docking.
    Chen HM; Liu BF; Huang HL; Hwang SF; Ho SY
    J Comput Chem; 2007 Jan; 28(2):612-23. PubMed ID: 17186483
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.
    Padhorny D; Kazennov A; Zerbe BS; Porter KA; Xia B; Mottarella SE; Kholodov Y; Ritchie DW; Vajda S; Kozakov D
    Proc Natl Acad Sci U S A; 2016 Jul; 113(30):E4286-93. PubMed ID: 27412858
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improving docking results via reranking of ensembles of ligand poses in multiple X-ray protein conformations with MM-GBSA.
    Greenidge PA; Kramer C; Mozziconacci JC; Sherman W
    J Chem Inf Model; 2014 Oct; 54(10):2697-717. PubMed ID: 25266271
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AMMOS: Automated Molecular Mechanics Optimization tool for in silico Screening.
    Pencheva T; Lagorce D; Pajeva I; Villoutreix BO; Miteva MA
    BMC Bioinformatics; 2008 Oct; 9():438. PubMed ID: 18925937
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Flexible Refinement of Protein-Ligand Docking on Manifolds.
    Mirzaei H; Villar E; Mottarella S; Beglov D; Paschalidis IC; Vajda S; Kozakov D; Vakili P
    Proc IEEE Conf Decis Control; 2013; ():1392-1397. PubMed ID: 24830567
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 14. GalaxyDock: protein-ligand docking with flexible protein side-chains.
    Shin WH; Seok C
    J Chem Inf Model; 2012 Dec; 52(12):3225-32. PubMed ID: 23198780
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Random drift particle swarm optimisation algorithm for highly flexible protein-ligand docking.
    Fu Y; Chen Z; Sun J
    J Theor Biol; 2018 Nov; 457():180-189. PubMed ID: 30170044
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Rapid protein-ligand docking using soft modes from molecular dynamics simulations to account for protein deformability: binding of FK506 to FKBP.
    Zacharias M
    Proteins; 2004 Mar; 54(4):759-67. PubMed ID: 14997571
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An anchor-dependent molecular docking process for docking small flexible molecules into rigid protein receptors.
    Lin TH; Lin GL
    J Chem Inf Model; 2008 Aug; 48(8):1638-55. PubMed ID: 18642894
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Flexible ligand docking: a multistep strategy approach.
    Wang J; Kollman PA; Kuntz ID
    Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
    [TBL] [Abstract][Full Text] [Related]  

  • 19. EDGA: A Population Evolution Direction-Guided Genetic Algorithm for Protein-Ligand Docking.
    Guan B; Zhang C; Ning J
    J Comput Biol; 2016 Jul; 23(7):585-96. PubMed ID: 26895461
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GWOVina: A grey wolf optimization approach to rigid and flexible receptor docking.
    Wong KM; Tai HK; Siu SWI
    Chem Biol Drug Des; 2021 Jan; 97(1):97-110. PubMed ID: 32679606
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.