177 related articles for article (PubMed ID: 26490504)
1. An algorithm to detect and communicate the differences in computational models describing biological systems.
Scharm M; Wolkenhauer O; Waltemath D
Bioinformatics; 2016 Feb; 32(4):563-70. PubMed ID: 26490504
[TBL] [Abstract][Full Text] [Related]
2. COMODI: an ontology to characterise differences in versions of computational models in biology.
Scharm M; Waltemath D; Mendes P; Wolkenhauer O
J Biomed Semantics; 2016 Jul; 7(1):46. PubMed ID: 27401413
[TBL] [Abstract][Full Text] [Related]
3. Evolution of computational models in BioModels Database and the Physiome Model Repository.
Scharm M; Gebhardt T; Touré V; Bagnacani A; Salehzadeh-Yazdi A; Wolkenhauer O; Waltemath D
BMC Syst Biol; 2018 Apr; 12(1):53. PubMed ID: 29650016
[TBL] [Abstract][Full Text] [Related]
4. BioModels Database: a repository of mathematical models of biological processes.
Chelliah V; Laibe C; Le Novère N
Methods Mol Biol; 2013; 1021():189-99. PubMed ID: 23715986
[TBL] [Abstract][Full Text] [Related]
5. Combining computational models, semantic annotations and simulation experiments in a graph database.
Henkel R; Wolkenhauer O; Waltemath D
Database (Oxford); 2015; 2015():. PubMed ID: 25754863
[TBL] [Abstract][Full Text] [Related]
6. SBMLToolbox: an SBML toolbox for MATLAB users.
Keating SM; Bornstein BJ; Finney A; Hucka M
Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
[TBL] [Abstract][Full Text] [Related]
7. Revision history aware repositories of computational models of biological systems.
Miller AK; Yu T; Britten R; Cooling MT; Lawson J; Cowan D; Garny A; Halstead MD; Hunter PJ; Nickerson DP; Nunns G; Wimalaratne SM; Nielsen PM
BMC Bioinformatics; 2011 Jan; 12():22. PubMed ID: 21235804
[TBL] [Abstract][Full Text] [Related]
8. Using chemical organization theory for model checking.
Kaleta C; Richter S; Dittrich P
Bioinformatics; 2009 Aug; 25(15):1915-22. PubMed ID: 19468053
[TBL] [Abstract][Full Text] [Related]
9. A model diagram layout extension for SBML.
Gauges R; Rost U; Sahle S; Wegner K
Bioinformatics; 2006 Aug; 22(15):1879-85. PubMed ID: 16709586
[TBL] [Abstract][Full Text] [Related]
10. A Computational Workflow for the Automated Generation of Models of Genetic Designs.
Misirli G; Nguyen T; McLaughlin JA; Vaidyanathan P; Jones TS; Densmore D; Myers C; Wipat A
ACS Synth Biol; 2019 Jul; 8(7):1548-1559. PubMed ID: 29782151
[TBL] [Abstract][Full Text] [Related]
11. A data integration approach for cell cycle analysis oriented to model simulation in systems biology.
Alfieri R; Merelli I; Mosca E; Milanesi L
BMC Syst Biol; 2007 Aug; 1():35. PubMed ID: 17678529
[TBL] [Abstract][Full Text] [Related]
12. A graphical method for reducing and relating models in systems biology.
Gay S; Soliman S; Fages F
Bioinformatics; 2010 Sep; 26(18):i575-81. PubMed ID: 20823324
[TBL] [Abstract][Full Text] [Related]
13. The systems biology simulation core algorithm.
Keller R; Dörr A; Tabira A; Funahashi A; Ziller MJ; Adams R; Rodriguez N; Le Novère N; Hiroi N; Planatscher H; Zell A; Dräger A
BMC Syst Biol; 2013 Jul; 7():55. PubMed ID: 23826941
[TBL] [Abstract][Full Text] [Related]
14. SYCAMORE--a systems biology computational analysis and modeling research environment.
Weidemann A; Richter S; Stein M; Sahle S; Gauges R; Gabdoulline R; Surovtsova I; Semmelrock N; Besson B; Rojas I; Wade R; Kummer U
Bioinformatics; 2008 Jun; 24(12):1463-4. PubMed ID: 18463116
[TBL] [Abstract][Full Text] [Related]
15. A strategy to establish Food Safety Model Repositories.
Plaza-Rodríguez C; Thoens C; Falenski A; Weiser AA; Appel B; Kaesbohrer A; Filter M
Int J Food Microbiol; 2015 Jul; 204():81-90. PubMed ID: 25863339
[TBL] [Abstract][Full Text] [Related]
16. The systems biology simulation core library.
Panchiwala H; Shah S; Planatscher H; Zakharchuk M; König M; Dräger A
Bioinformatics; 2022 Jan; 38(3):864-865. PubMed ID: 34554191
[TBL] [Abstract][Full Text] [Related]
17. Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.
Sütterlin T; Kolb C; Dickhaus H; Jäger D; Grabe N
Bioinformatics; 2013 Jan; 29(2):223-9. PubMed ID: 23162085
[TBL] [Abstract][Full Text] [Related]
18. An online model composition tool for system biology models.
Coskun SA; Cicek AE; Lai N; Dash RK; Ozsoyoglu ZM; Ozsoyoglu G
BMC Syst Biol; 2013 Sep; 7():88. PubMed ID: 24006914
[TBL] [Abstract][Full Text] [Related]
19. BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models.
Li C; Donizelli M; Rodriguez N; Dharuri H; Endler L; Chelliah V; Li L; He E; Henry A; Stefan MI; Snoep JL; Hucka M; Le Novère N; Laibe C
BMC Syst Biol; 2010 Jun; 4():92. PubMed ID: 20587024
[TBL] [Abstract][Full Text] [Related]
20. Improving the reuse of computational models through version control.
Waltemath D; Henkel R; Hälke R; Scharm M; Wolkenhauer O
Bioinformatics; 2013 Mar; 29(6):742-8. PubMed ID: 23335018
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]