These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 26531828)

  • 1. EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.
    van Duijvenboden K; de Boer BA; Capon N; Ruijter JM; Christoffels VM
    Nucleic Acids Res; 2016 Mar; 44(5):e42. PubMed ID: 26531828
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CIPHER: a flexible and extensive workflow platform for integrative next-generation sequencing data analysis and genomic regulatory element prediction.
    Guzman C; D'Orso I
    BMC Bioinformatics; 2017 Aug; 18(1):363. PubMed ID: 28789639
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Streamlined scanning for enhancer elements in Drosophila melanogaster.
    Voutev R; Mann RS
    Biotechniques; 2016; 60(3):141-4. PubMed ID: 26956092
    [TBL] [Abstract][Full Text] [Related]  

  • 4. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
    Niu M; Tabari ES; Su Z
    BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genome-wide quantitative enhancer activity maps identified by STARR-seq.
    Arnold CD; Gerlach D; Stelzer C; Boryń ŁM; Rath M; Stark A
    Science; 2013 Mar; 339(6123):1074-7. PubMed ID: 23328393
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Integrating diverse datasets improves developmental enhancer prediction.
    Erwin GD; Oksenberg N; Truty RM; Kostka D; Murphy KK; Ahituv N; Pollard KS; Capra JA
    PLoS Comput Biol; 2014 Jun; 10(6):e1003677. PubMed ID: 24967590
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ReMap 2022: a database of Human, Mouse, Drosophila and Arabidopsis regulatory regions from an integrative analysis of DNA-binding sequencing experiments.
    Hammal F; de Langen P; Bergon A; Lopez F; Ballester B
    Nucleic Acids Res; 2022 Jan; 50(D1):D316-D325. PubMed ID: 34751401
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction accuracy of regulatory elements from sequence varies by functional sequencing technique.
    Nowling RJ; Njoya K; Peters JG; Riehle MM
    Front Cell Infect Microbiol; 2023; 13():1182567. PubMed ID: 37600946
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An integrated ChIP-seq analysis platform with customizable workflows.
    Giannopoulou EG; Elemento O
    BMC Bioinformatics; 2011 Jul; 12():277. PubMed ID: 21736739
    [TBL] [Abstract][Full Text] [Related]  

  • 10. AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU.
    Fang CH; Theera-Ampornpunt N; Roth MA; Grama A; Chaterji S
    BMC Bioinformatics; 2019 Oct; 20(1):488. PubMed ID: 31590652
    [TBL] [Abstract][Full Text] [Related]  

  • 11. EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species.
    Gao T; Qian J
    Nucleic Acids Res; 2020 Jan; 48(D1):D58-D64. PubMed ID: 31740966
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy.
    Arbel H; Basu S; Fisher WW; Hammonds AS; Wan KH; Park S; Weiszmann R; Booth BW; Keranen SV; Henriquez C; Shams Solari O; Bickel PJ; Biggin MD; Celniker SE; Brown JB
    Proc Natl Acad Sci U S A; 2019 Jan; 116(3):900-908. PubMed ID: 30598455
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.
    Berman BP; Pfeiffer BD; Laverty TR; Salzberg SL; Rubin GM; Eisen MB; Celniker SE
    Genome Biol; 2004; 5(9):R61. PubMed ID: 15345045
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution.
    Arnold CD; Zabidi MA; Pagani M; Rath M; Schernhuber K; Kazmar T; Stark A
    Nat Biotechnol; 2017 Feb; 35(2):136-144. PubMed ID: 28024147
    [TBL] [Abstract][Full Text] [Related]  

  • 15. XenMine: A genomic interaction tool for the Xenopus community.
    Reid CD; Karra K; Chang J; Piskol R; Li Q; Li JB; Cherry JM; Baker JC
    Dev Biol; 2017 Jun; 426(2):155-164. PubMed ID: 27157655
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction of regulatory elements in mammalian genomes using chromatin signatures.
    Won KJ; Chepelev I; Ren B; Wang W
    BMC Bioinformatics; 2008 Dec; 9():547. PubMed ID: 19094206
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TTS mapping: integrative WEB tool for analysis of triplex formation target DNA sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.
    Jenjaroenpun P; Kuznetsov VA
    BMC Genomics; 2009 Dec; 10 Suppl 3(Suppl 3):S9. PubMed ID: 19958507
    [TBL] [Abstract][Full Text] [Related]  

  • 18. VISTA Enhancer Browser--a database of tissue-specific human enhancers.
    Visel A; Minovitsky S; Dubchak I; Pennacchio LA
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D88-92. PubMed ID: 17130149
    [TBL] [Abstract][Full Text] [Related]  

  • 19. STARR-seq - principles and applications.
    Muerdter F; Boryń ŁM; Arnold CD
    Genomics; 2015 Sep; 106(3):145-150. PubMed ID: 26072434
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
    Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.