267 related articles for article (PubMed ID: 26545824)
1. Automatic generation of bioinformatics tools for predicting protein-ligand binding sites.
Komiyama Y; Banno M; Ueki K; Saad G; Shimizu K
Bioinformatics; 2016 Mar; 32(6):901-7. PubMed ID: 26545824
[TBL] [Abstract][Full Text] [Related]
2. Machine learning accelerates MD-based binding pose prediction between ligands and proteins.
Terayama K; Iwata H; Araki M; Okuno Y; Tsuda K
Bioinformatics; 2018 Mar; 34(5):770-778. PubMed ID: 29040432
[TBL] [Abstract][Full Text] [Related]
3. LIBRA-WA: a web application for ligand binding site detection and protein function recognition.
Toti D; Viet Hung L; Tortosa V; Brandi V; Polticelli F
Bioinformatics; 2018 Mar; 34(5):878-880. PubMed ID: 29126218
[TBL] [Abstract][Full Text] [Related]
4. damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets.
Marshall OJ; Brand AH
Bioinformatics; 2015 Oct; 31(20):3371-3. PubMed ID: 26112292
[TBL] [Abstract][Full Text] [Related]
5. Allosite: a method for predicting allosteric sites.
Huang W; Lu S; Huang Z; Liu X; Mou L; Luo Y; Zhao Y; Liu Y; Chen Z; Hou T; Zhang J
Bioinformatics; 2013 Sep; 29(18):2357-9. PubMed ID: 23842804
[TBL] [Abstract][Full Text] [Related]
6. Methods for predicting protein-ligand binding sites.
Xie ZR; Hwang MJ
Methods Mol Biol; 2015; 1215():383-98. PubMed ID: 25330972
[TBL] [Abstract][Full Text] [Related]
7. AutoSite: an automated approach for pseudo-ligands prediction-from ligand-binding sites identification to predicting key ligand atoms.
Ravindranath PA; Sanner MF
Bioinformatics; 2016 Oct; 32(20):3142-3149. PubMed ID: 27354702
[TBL] [Abstract][Full Text] [Related]
8. Ligand-binding site prediction using ligand-interacting and binding site-enriched protein triangles.
Xie ZR; Hwang MJ
Bioinformatics; 2012 Jun; 28(12):1579-85. PubMed ID: 22495747
[TBL] [Abstract][Full Text] [Related]
9. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.
Vavra O; Filipovic J; Plhak J; Bednar D; Marques SM; Brezovsky J; Stourac J; Matyska L; Damborsky J
Bioinformatics; 2019 Dec; 35(23):4986-4993. PubMed ID: 31077297
[TBL] [Abstract][Full Text] [Related]
10. OpenStructure: a flexible software framework for computational structural biology.
Biasini M; Mariani V; Haas J; Scheuber S; Schenk AD; Schwede T; Philippsen A
Bioinformatics; 2010 Oct; 26(20):2626-8. PubMed ID: 20733063
[TBL] [Abstract][Full Text] [Related]
11. Protein-ligand binding residue prediction enhancement through hybrid deep heterogeneous learning of sequence and structure data.
Xia CQ; Pan X; Shen HB
Bioinformatics; 2020 May; 36(10):3018-3027. PubMed ID: 32091580
[TBL] [Abstract][Full Text] [Related]
12. ESAP plus: a web-based server for EST-SSR marker development.
Ponyared P; Ponsawat J; Tongsima S; Seresangtakul P; Akkasaeng C; Tantisuwichwong N
BMC Genomics; 2016 Dec; 17(Suppl 13):1035. PubMed ID: 28155670
[TBL] [Abstract][Full Text] [Related]
13. LigDig: a web server for querying ligand-protein interactions.
Fuller JC; Martinez M; Henrich S; Stank A; Richter S; Wade RC
Bioinformatics; 2015 Apr; 31(7):1147-9. PubMed ID: 25433696
[TBL] [Abstract][Full Text] [Related]
14. PipelineDog: a simple and flexible graphic pipeline construction and maintenance tool.
Zhou A; Zhang Y; Sun Y; Xing J
Bioinformatics; 2018 May; 34(9):1603-1605. PubMed ID: 29186378
[TBL] [Abstract][Full Text] [Related]
15. multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.
Ecale Zhou CL; Malfatti S; Kimbrel J; Philipson C; McNair K; Hamilton T; Edwards R; Souza B
Bioinformatics; 2019 Nov; 35(21):4402-4404. PubMed ID: 31086982
[TBL] [Abstract][Full Text] [Related]
16. Fuento: functional enrichment for bioinformatics.
Weichselbaum D; Zagrovic B; Polyansky AA
Bioinformatics; 2017 Aug; 33(16):2604-2606. PubMed ID: 28379299
[TBL] [Abstract][Full Text] [Related]
17. LiGRO: a graphical user interface for protein-ligand molecular dynamics.
Kagami LP; das Neves GM; da Silva AWS; Caceres RA; Kawano DF; Eifler-Lima VL
J Mol Model; 2017 Oct; 23(11):304. PubMed ID: 28980073
[TBL] [Abstract][Full Text] [Related]
18. EasyMIFS and SiteHound: a toolkit for the identification of ligand-binding sites in protein structures.
Ghersi D; Sanchez R
Bioinformatics; 2009 Dec; 25(23):3185-6. PubMed ID: 19789268
[TBL] [Abstract][Full Text] [Related]
19. SBAL: a practical tool to generate and edit structure-based amino acid sequence alignments.
Wang CK; Broder U; Weeratunga SK; Gasser RB; Loukas A; Hofmann A
Bioinformatics; 2012 Apr; 28(7):1026-7. PubMed ID: 22332239
[TBL] [Abstract][Full Text] [Related]
20. TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation.
Perovic V; Sumonja N; Gemovic B; Toska E; Roberts SG; Veljkovic N
Bioinformatics; 2017 Jan; 33(2):289-291. PubMed ID: 27605104
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]