BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

505 related articles for article (PubMed ID: 26553003)

  • 21. Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm.
    Kapilevich V; Seno S; Matsuda H; Takenaka Y
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(5):1620-1626. PubMed ID: 29994156
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Impact of data resolution on three-dimensional structure inference methods.
    Park J; Lin S
    BMC Bioinformatics; 2016 Feb; 17():70. PubMed ID: 26852142
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.
    Ma W; Ay F; Lee C; Gulsoy G; Deng X; Cook S; Hesson J; Cavanaugh C; Ware CB; Krumm A; Shendure J; Blau CA; Disteche CM; Noble WS; Duan Z
    Methods; 2018 Jun; 142():59-73. PubMed ID: 29382556
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.
    Shavit Y; Walker BJ; Lio' P
    Bioinformatics; 2016 Apr; 32(8):1121-9. PubMed ID: 26685310
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Can 3D diploid genome reconstruction from unphased Hi-C data be salvaged?
    Segal MR
    NAR Genom Bioinform; 2022 Jun; 4(2):lqac038. PubMed ID: 35571676
    [TBL] [Abstract][Full Text] [Related]  

  • 26. An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization.
    Szałaj P; Tang Z; Michalski P; Pietal MJ; Luo OJ; Sadowski M; Li X; Radew K; Ruan Y; Plewczynski D
    Genome Res; 2016 Dec; 26(12):1697-1709. PubMed ID: 27789526
    [TBL] [Abstract][Full Text] [Related]  

  • 27. HiCORE: Hi-C Analysis for Identification of Core Chromatin Looping Regions with Higher Resolution.
    Lee H; Seo PJ
    Mol Cells; 2021 Dec; 44(12):883-892. PubMed ID: 34963105
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Deciphering 3D Organization of Chromosomes Using Hi-C Data.
    Hofmann A; Heermann DW
    Methods Mol Biol; 2018; 1837():389-401. PubMed ID: 30109620
    [TBL] [Abstract][Full Text] [Related]  

  • 29. 3D Genome Reconstruction with ShRec3D+ and Hi-C Data.
    Li J; Zhang W; Li X
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(2):460-468. PubMed ID: 26955049
    [TBL] [Abstract][Full Text] [Related]  

  • 30. ChromoTrace: Computational reconstruction of 3D chromosome configurations for super-resolution microscopy.
    Barton C; Morganella S; Ødegård-Fougner Ø; Alexander S; Ries J; Fitzgerald T; Ellenberg J; Birney E
    PLoS Comput Biol; 2018 Mar; 14(3):e1006002. PubMed ID: 29522506
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Practical Analysis of Genome Contact Interaction Experiments.
    Carty MA; Elemento O
    Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Chromatin Conformation Capture-Based Analysis of Nuclear Architecture.
    Grob S; Grossniklaus U
    Methods Mol Biol; 2017; 1456():15-32. PubMed ID: 27770354
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.
    Saberi S; Farré P; Cuvier O; Emberly E
    BMC Bioinformatics; 2015 May; 16():171. PubMed ID: 26001583
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Topological domains in mammalian genomes identified by analysis of chromatin interactions.
    Dixon JR; Selvaraj S; Yue F; Kim A; Li Y; Shen Y; Hu M; Liu JS; Ren B
    Nature; 2012 Apr; 485(7398):376-80. PubMed ID: 22495300
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.
    Yan KK; Lou S; Gerstein M
    PLoS Comput Biol; 2017 Jul; 13(7):e1005647. PubMed ID: 28742097
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation.
    Belaghzal H; Dekker J; Gibcus JH
    Methods; 2017 Jul; 123():56-65. PubMed ID: 28435001
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Modelling genome-wide topological associating domains in mouse embryonic stem cells.
    Zhan Y; Giorgetti L; Tiana G
    Chromosome Res; 2017 Mar; 25(1):5-14. PubMed ID: 28108933
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2.
    Kaul A; Bhattacharyya S; Ay F
    Nat Protoc; 2020 Mar; 15(3):991-1012. PubMed ID: 31980751
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Analysis methods for studying the 3D architecture of the genome.
    Ay F; Noble WS
    Genome Biol; 2015 Sep; 16():183. PubMed ID: 26328929
    [TBL] [Abstract][Full Text] [Related]  

  • 40. GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data.
    Oluwadare O; Highsmith M; Turner D; Lieberman Aiden E; Cheng J
    BMC Mol Cell Biol; 2020 Aug; 21(1):60. PubMed ID: 32758136
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 26.