These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

213 related articles for article (PubMed ID: 26555444)

  • 1. RNA Thermodynamic Structural Entropy.
    Garcia-Martin JA; Clote P
    PLoS One; 2015; 10(11):e0137859. PubMed ID: 26555444
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Characterising RNA secondary structure space using information entropy.
    Sükösd Z; Knudsen B; Anderson JW; Novák A; Kjems J; Pedersen CN
    BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S22. PubMed ID: 23368905
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CONTRAfold: RNA secondary structure prediction without physics-based models.
    Do CB; Woods DA; Batzoglou S
    Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Computing the partition function for kinetically trapped RNA secondary structures.
    Lorenz WA; Clote P
    PLoS One; 2011 Jan; 6(1):e16178. PubMed ID: 21297972
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Expected degree for RNA secondary structure networks.
    Clote P
    J Comput Chem; 2015 Jan; 36(2):103-17. PubMed ID: 25382310
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
    Nebel ME; Scheid A
    Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Computing folding pathways between RNA secondary structures.
    Dotu I; Lorenz WA; Van Hentenryck P; Clote P
    Nucleic Acids Res; 2010 Mar; 38(5):1711-22. PubMed ID: 20044352
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Accelerated probabilistic inference of RNA structure evolution.
    Holmes I
    BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
    Waldispühl J; Clote P
    J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.
    Garcia-Martin JA; Dotu I; Clote P
    Nucleic Acids Res; 2015 Jul; 43(W1):W513-21. PubMed ID: 26019176
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamics of RNA structures by Wang-Landau sampling.
    Lou F; Clote P
    Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
    [TBL] [Abstract][Full Text] [Related]  

  • 12. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
    Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
    Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
    Sükösd Z; Andersen ES; Lyngsø R
    Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
    Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
    BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
    Song Y; Liu C; Malmberg RL; He C; Cai L
    Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Energy parameters and novel algorithms for an extended nearest neighbor energy model of RNA.
    Dotu I; Mechery V; Clote P
    PLoS One; 2014; 9(2):e85412. PubMed ID: 24586240
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
    Knudsen B; Hein J
    Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Network Properties of the Ensemble of RNA Structures.
    Clote P; Bayegan A
    PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.