147 related articles for article (PubMed ID: 26573665)
1. A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality.
To TH; Jacox E; Ranwez V; Scornavacca C
BMC Bioinformatics; 2015 Nov; 16():384. PubMed ID: 26573665
[TBL] [Abstract][Full Text] [Related]
2. ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.
Jacox E; Chauve C; Szöllősi GJ; Ponty Y; Scornavacca C
Bioinformatics; 2016 Jul; 32(13):2056-8. PubMed ID: 27153713
[TBL] [Abstract][Full Text] [Related]
3. Support measures to estimate the reliability of evolutionary events predicted by reconciliation methods.
Nguyen TH; Ranwez V; Berry V; Scornavacca C
PLoS One; 2013; 8(10):e73667. PubMed ID: 24124449
[TBL] [Abstract][Full Text] [Related]
4. Inferring Pareto-optimal reconciliations across multiple event costs under the duplication-loss-coalescence model.
Mawhorter R; Liu N; Libeskind-Hadas R; Wu YC
BMC Bioinformatics; 2019 Dec; 20(Suppl 20):639. PubMed ID: 31842732
[TBL] [Abstract][Full Text] [Related]
5. Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses.
Jacox E; Weller M; Tannier E; Scornavacca C
Bioinformatics; 2017 Apr; 33(7):980-987. PubMed ID: 28073758
[TBL] [Abstract][Full Text] [Related]
6. Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1077-1090. PubMed ID: 28622673
[TBL] [Abstract][Full Text] [Related]
7. Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree.
Wu T; Zhang L
BMC Bioinformatics; 2011 Oct; 12 Suppl 9(Suppl 9):S7. PubMed ID: 22151151
[TBL] [Abstract][Full Text] [Related]
8. Cophylogeny reconstruction via an approximate Bayesian computation.
Baudet C; Donati B; Sinaimeri B; Crescenzi P; Gautier C; Matias C; Sagot MF
Syst Biol; 2015 May; 64(3):416-31. PubMed ID: 25540454
[TBL] [Abstract][Full Text] [Related]
9. Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss.
Bansal MS; Alm EJ; Kellis M
Bioinformatics; 2012 Jun; 28(12):i283-91. PubMed ID: 22689773
[TBL] [Abstract][Full Text] [Related]
10. On the impact of uncertain gene tree rooting on duplication-transfer-loss reconciliation.
Kundu S; Bansal MS
BMC Bioinformatics; 2018 Aug; 19(Suppl 9):290. PubMed ID: 30367593
[TBL] [Abstract][Full Text] [Related]
11. Fast algorithm for the reconciliation of gene trees and LGT networks.
Scornavacca C; Mayol JCP; Cardona G
J Theor Biol; 2017 Apr; 418():129-137. PubMed ID: 28111320
[TBL] [Abstract][Full Text] [Related]
12. An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework.
Doyon JP; Hamel S; Chauve C
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):26-39. PubMed ID: 21464510
[TBL] [Abstract][Full Text] [Related]
13. Reconciliation revisited: handling multiple optima when reconciling with duplication, transfer, and loss.
Bansal MS; Alm EJ; Kellis M
J Comput Biol; 2013 Oct; 20(10):738-54. PubMed ID: 24033262
[TBL] [Abstract][Full Text] [Related]
14. Space of gene/species trees reconciliations and parsimonious models.
Doyon JP; Chauve C; Hamel S
J Comput Biol; 2009 Oct; 16(10):1399-418. PubMed ID: 19754270
[TBL] [Abstract][Full Text] [Related]
15. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
Mirkin BG; Fenner TI; Galperin MY; Koonin EV
BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
[TBL] [Abstract][Full Text] [Related]
16. On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees.
Kordi M; Bansal MS
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):587-599. PubMed ID: 28055898
[TBL] [Abstract][Full Text] [Related]
17. RecPhyloXML: a format for reconciled gene trees.
Duchemin W; Gence G; Arigon Chifolleau AM; Arvestad L; Bansal MS; Berry V; Boussau B; Chevenet F; Comte N; Davín AA; Dessimoz C; Dylus D; Hasic D; Mallo D; Planel R; Posada D; Scornavacca C; Szöllosi G; Zhang L; Tannier É; Daubin V
Bioinformatics; 2018 Nov; 34(21):3646-3652. PubMed ID: 29762653
[TBL] [Abstract][Full Text] [Related]
18. Pareto-optimal phylogenetic tree reconciliation.
Libeskind-Hadas R; Wu YC; Bansal MS; Kellis M
Bioinformatics; 2014 Jun; 30(12):i87-95. PubMed ID: 24932009
[TBL] [Abstract][Full Text] [Related]
19. Gene tree species tree reconciliation with gene conversion.
Hasić D; Tannier E
J Math Biol; 2019 May; 78(6):1981-2014. PubMed ID: 30767052
[TBL] [Abstract][Full Text] [Related]
20. Reconciliation and local gene tree rearrangement can be of mutual profit.
Nguyen TH; Ranwez V; Pointet S; Chifolleau AM; Doyon JP; Berry V
Algorithms Mol Biol; 2013 Apr; 8(1):12. PubMed ID: 23566548
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]