These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
81 related articles for article (PubMed ID: 26575576)
1. CoMoDo: identifying dynamic protein domains based on covariances of motion. Wieninger SA; Ullmann GM J Chem Theory Comput; 2015 Jun; 11(6):2841-54. PubMed ID: 26575576 [TBL] [Abstract][Full Text] [Related]
2. The change of protein intradomain mobility on ligand binding: is it a commonly observed phenomenon? Yesylevskyy SO; Kharkyanen VN; Demchenko AP Biophys J; 2006 Oct; 91(8):3002-13. PubMed ID: 16877502 [TBL] [Abstract][Full Text] [Related]
3. Method for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration. Sim J; Sim J; Park E; Lee J Proteins; 2015 Jun; 83(6):1054-67. PubMed ID: 25820699 [TBL] [Abstract][Full Text] [Related]
4. Protein promiscuity: drug resistance and native functions--HIV-1 case. Fernández A; Tawfik DS; Berkhout B; Sanders R; Kloczkowski A; Sen T; Jernigan B J Biomol Struct Dyn; 2005 Jun; 22(6):615-24. PubMed ID: 15842167 [TBL] [Abstract][Full Text] [Related]
5. Dynamics alignment: comparison of protein dynamics in the SCOP database. Tobi D Proteins; 2012 Apr; 80(4):1167-76. PubMed ID: 22275069 [TBL] [Abstract][Full Text] [Related]
6. Analysis of domain movements in glutamine-binding protein with simple models. Su JG; Jiao X; Sun TG; Li CH; Chen WZ; Wang CX Biophys J; 2007 Feb; 92(4):1326-35. PubMed ID: 17098801 [TBL] [Abstract][Full Text] [Related]
7. Adaptability of protein structures to enable functional interactions and evolutionary implications. Haliloglu T; Bahar I Curr Opin Struct Biol; 2015 Dec; 35():17-23. PubMed ID: 26254902 [TBL] [Abstract][Full Text] [Related]
8. Scooby-domain: prediction of globular domains in protein sequence. George RA; Lin K; Heringa J Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W160-3. PubMed ID: 15980446 [TBL] [Abstract][Full Text] [Related]
9. Identifying the hierarchy of dynamic domains in proteins using the data of molecular dynamics simulations. Yesylevskyy SO Protein Pept Lett; 2010 Apr; 17(4):507-16. PubMed ID: 20044922 [TBL] [Abstract][Full Text] [Related]
10. PyInteraph: a framework for the analysis of interaction networks in structural ensembles of proteins. Tiberti M; Invernizzi G; Lambrughi M; Inbar Y; Schreiber G; Papaleo E J Chem Inf Model; 2014 May; 54(5):1537-51. PubMed ID: 24702124 [TBL] [Abstract][Full Text] [Related]
11. Decomposing protein networks into domain-domain interactions. Albrecht M; Huthmacher C; Tosatto SC; Lengauer T Bioinformatics; 2005 Sep; 21 Suppl 2():ii220-1. PubMed ID: 16204107 [TBL] [Abstract][Full Text] [Related]
12. ResiCon: a method for the identification of dynamic domains, hinges and interfacial regions in proteins. Dziubiński M; Daniluk P; Lesyng B Bioinformatics; 2016 Jan; 32(1):25-34. PubMed ID: 26342233 [TBL] [Abstract][Full Text] [Related]
13. SnapDRAGON: a method to delineate protein structural domains from sequence data. George RA; Heringa J J Mol Biol; 2002 Feb; 316(3):839-51. PubMed ID: 11866536 [TBL] [Abstract][Full Text] [Related]
14. Conservation and specialization in PAS domain dynamics. Pandini A; Bonati L Protein Eng Des Sel; 2005 Mar; 18(3):127-37. PubMed ID: 15820977 [TBL] [Abstract][Full Text] [Related]
15. Rapid simulation of protein motion: merging flexibility, rigidity and normal mode analyses. Jimenez-Roldan JE; Freedman RB; Römer RA; Wells SA Phys Biol; 2012 Feb; 9(1):016008. PubMed ID: 22313618 [TBL] [Abstract][Full Text] [Related]
16. Hierarchical domain-motion analysis of conformational changes in sarcoplasmic reticulum Ca²⁺-ATPase. Kobayashi C; Koike R; Ota M; Sugita Y Proteins; 2015 Apr; 83(4):746-56. PubMed ID: 25641564 [TBL] [Abstract][Full Text] [Related]
17. A dynamic model for the allosteric mechanism of GroEL. Ma J; Sigler PB; Xu Z; Karplus M J Mol Biol; 2000 Sep; 302(2):303-13. PubMed ID: 10970735 [TBL] [Abstract][Full Text] [Related]
18. Automatic domain decomposition of proteins by a Gaussian Network Model. Kundu S; Sorensen DC; Phillips GN Proteins; 2004 Dec; 57(4):725-33. PubMed ID: 15478120 [TBL] [Abstract][Full Text] [Related]