These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 26575932)

  • 1. (Dis)similarity Index To Compare Correlated Motions in Molecular Simulations.
    Tiberti M; Invernizzi G; Papaleo E
    J Chem Theory Comput; 2015 Sep; 11(9):4404-14. PubMed ID: 26575932
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Simple, yet powerful methodologies for conformational sampling of proteins.
    Harada R; Takano Y; Baba T; Shigeta Y
    Phys Chem Chem Phys; 2015 Mar; 17(9):6155-73. PubMed ID: 25659594
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    García AE; Hummer G
    Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Frontiers in molecular dynamics simulations of DNA.
    Pérez A; Luque FJ; Orozco M
    Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Experimental verification of force fields for molecular dynamics simulations using Gly-Pro-Gly-Gly.
    Aliev AE; Courtier-Murias D
    J Phys Chem B; 2010 Sep; 114(38):12358-75. PubMed ID: 20825228
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting Functional Dynamics in Proteins with Comparative Perturbed-Ensembles Analysis.
    Yao XQ; Hamelberg D
    Acc Chem Res; 2019 Dec; 52(12):3455-3464. PubMed ID: 31793290
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Motion Tree Delineates Hierarchical Structure of Protein Dynamics Observed in Molecular Dynamics Simulation.
    Moritsugu K; Koike R; Yamada K; Kato H; Kidera A
    PLoS One; 2015; 10(7):e0131583. PubMed ID: 26148295
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics.
    Philippopoulos M; Mandel AM; Palmer AG; Lim C
    Proteins; 1997 Aug; 28(4):481-93. PubMed ID: 9261865
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor.
    Doruker P; Atilgan AR; Bahar I
    Proteins; 2000 Aug; 40(3):512-24. PubMed ID: 10861943
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Validating Molecular Dynamics Simulations against Experimental Observables in Light of Underlying Conformational Ensembles.
    Childers MC; Daggett V
    J Phys Chem B; 2018 Jul; 122(26):6673-6689. PubMed ID: 29864281
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ENCORE: Software for Quantitative Ensemble Comparison.
    Tiberti M; Papaleo E; Bengtsen T; Boomsma W; Lindorff-Larsen K
    PLoS Comput Biol; 2015 Oct; 11(10):e1004415. PubMed ID: 26505632
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations.
    Ostermeir K; Zacharias M
    Proteins; 2014 Dec; 82(12):3410-9. PubMed ID: 25243707
    [TBL] [Abstract][Full Text] [Related]  

  • 14. [Protein conformational dynamics of crambin in crystal, solution and in the trajectories of molecular dynamics simulations].
    Abaturov LV; Nosova NG
    Biofizika; 2013; 58(4):599-617. PubMed ID: 24455881
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exploring free energy landscapes of large conformational changes: molecular dynamics with excited normal modes.
    Costa MG; Batista PR; Bisch PM; Perahia D
    J Chem Theory Comput; 2015 Jun; 11(6):2755-67. PubMed ID: 26575568
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A normal mode-based geometric simulation approach for exploring biologically relevant conformational transitions in proteins.
    Ahmed A; Rippmann F; Barnickel G; Gohlke H
    J Chem Inf Model; 2011 Jul; 51(7):1604-22. PubMed ID: 21639141
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Validation of Molecular Dynamics Simulations for Prediction of Three-Dimensional Structures of Small Proteins.
    Kato K; Nakayoshi T; Fukuyoshi S; Kurimoto E; Oda A
    Molecules; 2017 Oct; 22(10):. PubMed ID: 29023395
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Are crystallographic B-factors suitable for calculating protein conformational entropy?
    Caldararu O; Kumar R; Oksanen E; Logan DT; Ryde U
    Phys Chem Chem Phys; 2019 Aug; 21(33):18149-18160. PubMed ID: 31389436
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations.
    Olson MA; Chaudhury S; Lee MS
    J Comput Chem; 2011 Nov; 32(14):3014-22. PubMed ID: 21793008
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models.
    Sankar K; Mishra SK; Jernigan RL
    J Phys Chem B; 2018 May; 122(21):5409-5417. PubMed ID: 29376347
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.