These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 26576947)

  • 1. Reference-free inference of tumor phylogenies from single-cell sequencing data.
    Subramanian A; Schwartz R
    BMC Genomics; 2015; 16 Suppl 11(Suppl 11):S7. PubMed ID: 26576947
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inference of tumor phylogenies from genomic assays on heterogeneous samples.
    Subramanian A; Shackney S; Schwartz R
    J Biomed Biotechnol; 2012; 2012():797812. PubMed ID: 22654484
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automated reconstruction of whole-genome phylogenies from short-sequence reads.
    Bertels F; Silander OK; Pachkov M; Rainey PB; van Nimwegen E
    Mol Biol Evol; 2014 May; 31(5):1077-88. PubMed ID: 24600054
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring models of multiscale copy number evolution for single-tumor phylogenetics.
    Chowdhury SA; Gertz EM; Wangsa D; Heselmeyer-Haddad K; Ried T; Schäffer AA; Schwartz R
    Bioinformatics; 2015 Jun; 31(12):i258-67. PubMed ID: 26072490
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Parameter, noise, and tree topology effects in tumor phylogeny inference.
    Tomlinson K; Oesper L
    BMC Med Genomics; 2019 Dec; 12(Suppl 10):184. PubMed ID: 31865909
    [TBL] [Abstract][Full Text] [Related]  

  • 6. gpps: an ILP-based approach for inferring cancer progression with mutation losses from single cell data.
    Ciccolella S; Soto Gomez M; Patterson MD; Della Vedova G; Hajirasouliha I; Bonizzoni P
    BMC Bioinformatics; 2020 Dec; 21(Suppl 1):413. PubMed ID: 33297943
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors.
    Weber LL; Aguse N; Chia N; El-Kebir M
    PLoS Comput Biol; 2020 Oct; 16(10):e1008240. PubMed ID: 33001973
    [TBL] [Abstract][Full Text] [Related]  

  • 8. kmer2vec: A Novel Method for Comparing DNA Sequences by word2vec Embedding.
    Ren R; Yin C; S-T Yau S
    J Comput Biol; 2022 Sep; 29(9):1001-1021. PubMed ID: 35593919
    [TBL] [Abstract][Full Text] [Related]  

  • 9. KINN: An alignment-free accurate phylogeny reconstruction method based on inner distance distributions of k-mer pairs in biological sequences.
    Tang R; Yu Z; Li J
    Mol Phylogenet Evol; 2023 Feb; 179():107662. PubMed ID: 36375789
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Statistically Consistent k-mer Methods for Phylogenetic Tree Reconstruction.
    Allman ES; Rhodes JA; Sullivant S
    J Comput Biol; 2017 Feb; 24(2):153-171. PubMed ID: 27387364
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome classification improvements based on k-mer intervals in sequences.
    Han GB; Cho DH
    Genomics; 2019 Dec; 111(6):1574-1582. PubMed ID: 30439480
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sensitivity to sequencing depth in single-cell cancer genomics.
    Alves JM; Posada D
    Genome Med; 2018 Apr; 10(1):29. PubMed ID: 29661213
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Applying unmixing to gene expression data for tumor phylogeny inference.
    Schwartz R; Shackney SE
    BMC Bioinformatics; 2010 Jan; 11():42. PubMed ID: 20089185
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deconvolution and phylogeny inference of structural variations in tumor genomic samples.
    Eaton J; Wang J; Schwartz R
    Bioinformatics; 2018 Jul; 34(13):i357-i365. PubMed ID: 29950001
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles.
    Subramanian A; Shackney S; Schwartz R
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(6):1422-31. PubMed ID: 24407301
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes.
    Chae H; Park J; Lee SW; Nephew KP; Kim S
    Nucleic Acids Res; 2013 May; 41(9):4783-91. PubMed ID: 23519616
    [TBL] [Abstract][Full Text] [Related]  

  • 17. phyBWT2: phylogeny reconstruction via eBWT positional clustering.
    Guerrini V; Conte A; Grossi R; Liti G; Rosone G; Tattini L
    Algorithms Mol Biol; 2023 Aug; 18(1):11. PubMed ID: 37537624
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
    Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
    Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer.
    Zhang Q; Jun SR; Leuze M; Ussery D; Nookaew I
    Sci Rep; 2017 Jan; 7():40712. PubMed ID: 28102365
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A k-mer-Based Approach for Phylogenetic Classification of Taxa in Environmental Genomic Data.
    Van Etten J; Stephens TG; Bhattacharya D
    Syst Biol; 2023 Nov; 72(5):1101-1118. PubMed ID: 37314057
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.