BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

272 related articles for article (PubMed ID: 26586576)

  • 1. Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis.
    Sato K; Kuroki Y; Kumita W; Fujiyama A; Toyoda A; Kawai J; Iriki A; Sasaki E; Okano H; Sakakibara Y
    Sci Rep; 2015 Nov; 5():16894. PubMed ID: 26586576
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data.
    Jayakumar V; Ishii H; Seki M; Kumita W; Inoue T; Hase S; Sato K; Okano H; Sasaki E; Sakakibara Y
    BMC Genomics; 2020 Apr; 21(Suppl 3):243. PubMed ID: 32241258
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads.
    Wang Z; Hobson N; Galindo L; Zhu S; Shi D; McDill J; Yang L; Hawkins S; Neutelings G; Datla R; Lambert G; Galbraith DW; Grassa CJ; Geraldes A; Cronk QC; Cullis C; Dash PK; Kumar PA; Cloutier S; Sharpe AG; Wong GK; Wang J; Deyholos MK
    Plant J; 2012 Nov; 72(3):461-73. PubMed ID: 22757964
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Qualitative de novo analysis of full length cDNA and quantitative analysis of gene expression for common marmoset (Callithrix jacchus) transcriptomes using parallel long-read technology and short-read sequencing.
    Shimizu M; Iwano S; Uno Y; Uehara S; Inoue T; Murayama N; Onodera J; Sasaki E; Yamazaki H
    PLoS One; 2014; 9(6):e100936. PubMed ID: 24977701
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.
    Liu S; Zhang Y; Zhou Z; Waldbieser G; Sun F; Lu J; Zhang J; Jiang Y; Zhang H; Wang X; Rajendran KV; Khoo L; Kucuktas H; Peatman E; Liu Z
    BMC Genomics; 2012 Nov; 13():595. PubMed ID: 23127152
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads.
    Du H; Liang C
    Nat Commun; 2019 Nov; 10(1):5360. PubMed ID: 31767853
    [TBL] [Abstract][Full Text] [Related]  

  • 7. U
    Castro CJ; Ng TFF
    J Comput Biol; 2017 Nov; 24(11):1071-1080. PubMed ID: 28418726
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
    Chu C; Li X; Wu Y
    BMC Genomics; 2019 Jun; 20(Suppl 5):426. PubMed ID: 31167639
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Characterization of 954 bovine full-CDS cDNA sequences.
    Harhay GP; Sonstegard TS; Keele JW; Heaton MP; Clawson ML; Snelling WM; Wiedmann RT; Van Tassell CP; Smith TP
    BMC Genomics; 2005 Nov; 6():166. PubMed ID: 16305752
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Next-generation sequencing reveals genomic features in the Japanese quail.
    Kawahara-Miki R; Sano S; Nunome M; Shimmura T; Kuwayama T; Takahashi S; Kawashima T; Matsuda Y; Yoshimura T; Kono T
    Genomics; 2013 Jun; 101(6):345-53. PubMed ID: 23557672
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Chromosomal-scale de novo genome assemblies of Cynomolgus Macaque and Common Marmoset.
    Jayakumar V; Nishimura O; Kadota M; Hirose N; Sano H; Murakawa Y; Yamamoto Y; Nakaya M; Tsukiyama T; Seita Y; Nakamura S; Kawai J; Sasaki E; Ema M; Kuraku S; Kawaji H; Sakakibara Y
    Sci Data; 2021 Jun; 8(1):159. PubMed ID: 34183680
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.
    Swain MT; Tsai IJ; Assefa SA; Newbold C; Berriman M; Otto TD
    Nat Protoc; 2012 Jun; 7(7):1260-84. PubMed ID: 22678431
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.
    Al-Okaily AA
    BMC Genomics; 2016 Mar; 17():193. PubMed ID: 26945881
    [TBL] [Abstract][Full Text] [Related]  

  • 14. From sequence mapping to genome assemblies.
    Otto TD
    Methods Mol Biol; 2015; 1201():19-50. PubMed ID: 25388106
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Whole Genome Analysis of SNV and Indel Polymorphism in Common Marmosets (
    Harris RA; Raveendran M; Warren W; LaDeana HW; Tomlinson C; Graves-Lindsay T; Green RE; Schmidt JK; Colwell JC; Makulec AT; Cole SA; Cheeseman IH; Ross CN; Capuano S; Eichler EE; Levine JE; Rogers J
    Genes (Basel); 2023 Dec; 14(12):. PubMed ID: 38137007
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multi-CAR: a tool of contig scaffolding using multiple references.
    Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome.
    Chen M; Hu Y; Liu J; Wu Q; Zhang C; Yu J; Xiao J; Wei F; Wu J
    Sci Rep; 2015 Dec; 5():18019. PubMed ID: 26658305
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica).
    Li X; Kui L; Zhang J; Xie Y; Wang L; Yan Y; Wang N; Xu J; Li C; Wang W; van Nocker S; Dong Y; Ma F; Guan Q
    Gigascience; 2016 Aug; 5(1):35. PubMed ID: 27503335
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Mapping contigs using CONTIGuator.
    Galardini M; Mengoni A; Bazzicalupo M
    Methods Mol Biol; 2015; 1231():163-76. PubMed ID: 25343865
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.