These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 26588312)

  • 21. CoCo-MD: A Simple and Effective Method for the Enhanced Sampling of Conformational Space.
    Shkurti A; Styliari ID; Balasubramanian V; Bethune I; Pedebos C; Jha S; Laughton CA
    J Chem Theory Comput; 2019 Apr; 15(4):2587-2596. PubMed ID: 30620585
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Distributions of experimental protein structures on coarse-grained free energy landscapes.
    Sankar K; Liu J; Wang Y; Jernigan RL
    J Chem Phys; 2015 Dec; 143(24):243153. PubMed ID: 26723638
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Integrating an Enhanced Sampling Method and Small-Angle X-Ray Scattering to Study Intrinsically Disordered Proteins.
    Ding C; Wang S; Zhang Z
    Front Mol Biosci; 2021; 8():621128. PubMed ID: 34150843
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Multiscale Coarse-Graining via Normal Mode Analysis.
    Xia F; Lu L
    J Chem Theory Comput; 2012 Nov; 8(11):4797-806. PubMed ID: 26605632
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Can principal components yield a dimension reduced description of protein dynamics on long time scales?
    Lange OF; Grubmüller H
    J Phys Chem B; 2006 Nov; 110(45):22842-52. PubMed ID: 17092036
    [TBL] [Abstract][Full Text] [Related]  

  • 26. How many atoms are required to characterize accurately trajectory fluctuations of a protein?
    Cukier RI
    J Chem Phys; 2010 Jun; 132(24):245101. PubMed ID: 20590215
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Large-scale comparison of protein essential dynamics from molecular dynamics simulations and coarse-grained normal mode analyses.
    Ahmed A; Villinger S; Gohlke H
    Proteins; 2010 Dec; 78(16):3341-52. PubMed ID: 20848551
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Principal component and normal mode analysis of proteins; a quantitative comparison using the GroEL subunit.
    Skjaerven L; Martinez A; Reuter N
    Proteins; 2011 Jan; 79(1):232-43. PubMed ID: 21058295
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Prediction and validation of protein intermediate states from structurally rich ensembles and coarse-grained simulations.
    Orellana L; Yoluk O; Carrillo O; Orozco M; Lindahl E
    Nat Commun; 2016 Aug; 7():12575. PubMed ID: 27578633
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Approaching Elastic Network Models to Molecular Dynamics Flexibility.
    Orellana L; Rueda M; Ferrer-Costa C; Lopez-Blanco JR; Chacón P; Orozco M
    J Chem Theory Comput; 2010 Sep; 6(9):2910-23. PubMed ID: 26616090
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Efficiency of Adaptive Temperature-Based Replica Exchange for Sampling Large-Scale Protein Conformational Transitions.
    Zhang W; Chen J
    J Chem Theory Comput; 2013 Jun; 9(6):2849-56. PubMed ID: 26583873
    [TBL] [Abstract][Full Text] [Related]  

  • 33. An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins.
    Kirillova S; Cortés J; Stefaniu A; Siméon T
    Proteins; 2008 Jan; 70(1):131-43. PubMed ID: 17640073
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Hamiltonian replica exchange combined with elastic network analysis to enhance global domain motions in atomistic molecular dynamics simulations.
    Ostermeir K; Zacharias M
    Proteins; 2014 Dec; 82(12):3410-9. PubMed ID: 25243707
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.
    Tama F; Miyashita O; Brooks CL
    J Mol Biol; 2004 Apr; 337(4):985-99. PubMed ID: 15033365
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Molecular dynamics of large-ring cyclodextrins: principal component analysis of the conformational interconversions.
    Gotsev MG; Ivanov PM
    J Phys Chem B; 2009 Apr; 113(17):5752-9. PubMed ID: 19344106
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Probing the folded state and mechanical unfolding pathways of T4 lysozyme using all-atom and coarse-grained molecular simulation.
    Zheng W; Glenn P
    J Chem Phys; 2015 Jan; 142(3):035101. PubMed ID: 25612731
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Collective Langevin dynamics of conformational motions in proteins.
    Lange OF; Grubmüller H
    J Chem Phys; 2006 Jun; 124(21):214903. PubMed ID: 16774438
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping.
    Frickenhaus S; Kannan S; Zacharias M
    J Comput Chem; 2009 Feb; 30(3):479-92. PubMed ID: 18680215
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A Retrospective on the Development of Methods for the Analysis of Protein Conformational Ensembles.
    Hayward S
    Protein J; 2023 Jun; 42(3):181-191. PubMed ID: 37072659
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.