These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

171 related articles for article (PubMed ID: 26589460)

  • 1. Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2.
    Zepeda-Mendoza CJ; Mukhopadhyay S; Wong ES; Harder N; Splinter E; de Wit E; Eckersley-Maslin MA; Ried T; Eils R; Rohr K; Mills A; de Laat W; Flicek P; Sengupta AM; Spector DL
    BMC Genomics; 2015 Nov; 16():982. PubMed ID: 26589460
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Determination of High-Resolution 3D Chromatin Organization Using Circular Chromosome Conformation Capture (4C-seq).
    Matelot M; Noordermeer D
    Methods Mol Biol; 2016; 1480():223-41. PubMed ID: 27659989
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detection of Allele-Specific 3D Chromatin Interactions Using High-Resolution In-Nucleus 4C-seq.
    Miranda M; Noordermeer D; Moindrot B
    Methods Mol Biol; 2022; 2532():15-33. PubMed ID: 35867243
    [TBL] [Abstract][Full Text] [Related]  

  • 4. peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data.
    Geeven G; Teunissen H; de Laat W; de Wit E
    Nucleic Acids Res; 2018 Sep; 46(15):e91. PubMed ID: 29800273
    [TBL] [Abstract][Full Text] [Related]  

  • 5. 4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis.
    Krijger PHL; Geeven G; Bianchi V; Hilvering CRE; de Laat W
    Methods; 2020 Jan; 170():17-32. PubMed ID: 31351925
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting Spatial Chromatin Organization by Chromosome Conformation Capture II: Genome-Wide Profiling by Hi-C.
    Vietri Rudan M; Hadjur S; Sexton T
    Methods Mol Biol; 2017; 1589():47-74. PubMed ID: 26900130
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Detection of Short-Range DNA Interactions in Mammalian Cells Using High-Resolution Circular Chromosome Conformation Capture Coupled to Deep Sequencing.
    Millau JF; Gaudreau L
    Methods Mol Biol; 2015; 1334():245-59. PubMed ID: 26404155
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A Guided Protocol for Array Based T2C: A High-Quality Selective High-Resolution High-Throughput Chromosome Interaction Capture.
    Knoch TA
    Curr Protoc Hum Genet; 2018 Oct; 99(1):e55. PubMed ID: 30199150
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparative analysis of 4C-Seq data generated from enzyme-based and sonication-based methods.
    Gao F; Wei Z; Lu W; Wang K
    BMC Genomics; 2013 May; 14():345. PubMed ID: 23705979
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of 4C-seq data: A comparison of methods.
    Zisis D; Krajewski P; Stam M; Weber B; Hövel I
    J Bioinform Comput Biol; 2020 Feb; 18(1):2050001. PubMed ID: 32336253
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Reconstruction of 3D genome architecture via a two-stage algorithm.
    Segal MR; Bengtsson HL
    BMC Bioinformatics; 2015 Nov; 16():373. PubMed ID: 26553003
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Circular Chromosome Conformation Capture Sequencing (4C-Seq ) in Primary Adherent Cells.
    Marsman J; Day RC; Gimenez G
    Methods Mol Biol; 2022; 2458():301-320. PubMed ID: 35103974
    [TBL] [Abstract][Full Text] [Related]  

  • 13. 4C-Seq: Interrogating Chromatin Looping with Circular Chromosome Conformation Capture.
    Karasu N; Sexton T
    Methods Mol Biol; 2021; 2157():19-34. PubMed ID: 32820397
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale.
    Giorgetti L; Piolot T; Heard E
    Methods Mol Biol; 2015; 1262():37-53. PubMed ID: 25555574
    [TBL] [Abstract][Full Text] [Related]  

  • 15. 4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data.
    Irastorza-Azcarate I; Acemel RD; Tena JJ; Maeso I; Gómez-Skarmeta JL; Devos DP
    PLoS Comput Biol; 2018 Mar; 14(3):e1006030. PubMed ID: 29522512
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Characteristic arrangement of nucleosomes is predictive of chromatin interactions at kilobase resolution.
    Zhang H; Li F; Jia Y; Xu B; Zhang Y; Li X; Zhang Z
    Nucleic Acids Res; 2017 Dec; 45(22):12739-12751. PubMed ID: 29036650
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Low Input Targeted Chromatin Capture (Low-T2C).
    Boltsis I; Nowosad K; Brouwer RWW; Tylzanowski P; van IJcken WFJ; Huylebroeck D; Grosveld F; Kolovos P
    Methods Mol Biol; 2021; 2351():165-179. PubMed ID: 34382189
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Circular Chromosome Conformation Capture in Plants.
    Grob S
    Methods Mol Biol; 2017; 1610():73-92. PubMed ID: 28439858
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization.
    Szałaj P; Tang Z; Michalski P; Pietal MJ; Luo OJ; Sadowski M; Li X; Radew K; Ruan Y; Plewczynski D
    Genome Res; 2016 Dec; 26(12):1697-1709. PubMed ID: 27789526
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Assay for transposase-accessible chromatin and circularized chromosome conformation capture, two methods to explore the regulatory landscapes of genes in zebrafish.
    Fernández-Miñán A; Bessa J; Tena JJ; Gómez-Skarmeta JL
    Methods Cell Biol; 2016; 135():413-30. PubMed ID: 27443938
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.