These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

79 related articles for article (PubMed ID: 26592282)

  • 1. Elastic Network Models of Nucleic Acids Flexibility.
    Setny P; Zacharias M
    J Chem Theory Comput; 2013 Dec; 9(12):5460-70. PubMed ID: 26592282
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Approaching Elastic Network Models to Molecular Dynamics Flexibility.
    Orellana L; Rueda M; Ferrer-Costa C; Lopez-Blanco JR; Chacón P; Orozco M
    J Chem Theory Comput; 2010 Sep; 6(9):2910-23. PubMed ID: 26616090
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of Protein Elastic Network Models Based on an Analysis of Collective Motions.
    Fuglebakk E; Reuter N; Hinsen K
    J Chem Theory Comput; 2013 Dec; 9(12):5618-28. PubMed ID: 26592296
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring a weighted elastic network from partial unfolding with coarse-grained simulations.
    de Mendonça MR; Rizzi LG; Contessoto V; Leite VB; Alves NA
    Proteins; 2014 Jan; 82(1):119-29. PubMed ID: 23900877
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Elastic network models capture the motions apparent within ensembles of RNA structures.
    Zimmermann MT; Jernigan RL
    RNA; 2014 Jun; 20(6):792-804. PubMed ID: 24759093
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A connection rule for alpha-carbon coarse-grained elastic network models using chemical bond information.
    Jeong JI; Jang Y; Kim MK
    J Mol Graph Model; 2006 Jan; 24(4):296-306. PubMed ID: 16289973
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparing normal modes across different models and scales: Hessian reduction versus coarse-graining.
    Ghysels A; Miller BT; Pickard FC; Brooks BR
    J Comput Chem; 2012 Oct; 33(28):2250-75. PubMed ID: 22941785
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics.
    Kim JI; Na S; Eom K
    J Comput Chem; 2011 Jan; 32(1):161-9. PubMed ID: 20645300
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fluctuation matching approach for elastic network model and structure-based model of biomacromolecules.
    Bope CD; Tong D; Li X; Lu L
    Prog Biophys Mol Biol; 2017 Sep; 128():100-112. PubMed ID: 28043838
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Robust elastic network model: A general modeling for precise understanding of protein dynamics.
    Kim MH; Lee BH; Kim MK
    J Struct Biol; 2015 Jun; 190(3):338-47. PubMed ID: 25891099
    [TBL] [Abstract][Full Text] [Related]  

  • 11. New generation of elastic network models.
    López-Blanco JR; Chacón P
    Curr Opin Struct Biol; 2016 Apr; 37():46-53. PubMed ID: 26716577
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.
    Stember JN; Wriggers W
    J Chem Phys; 2009 Aug; 131(7):074112. PubMed ID: 19708737
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient prediction of protein conformational pathways based on the hybrid elastic network model.
    Seo S; Jang Y; Qian P; Liu WK; Choi JB; Lim BS; Kim MK
    J Mol Graph Model; 2014 Feb; 47():25-36. PubMed ID: 24296313
    [TBL] [Abstract][Full Text] [Related]  

  • 14. All-atom and coarse-grained simulations of the forced unfolding pathways of the SNARE complex.
    Zheng W
    Proteins; 2014 Jul; 82(7):1376-86. PubMed ID: 24403006
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bridging between normal mode analysis and elastic network models.
    Na H; Song G
    Proteins; 2014 Sep; 82(9):2157-68. PubMed ID: 24692201
    [TBL] [Abstract][Full Text] [Related]  

  • 17. REACH coarse-grained simulation of a cellulose fiber.
    Glass DC; Moritsugu K; Cheng X; Smith JC
    Biomacromolecules; 2012 Sep; 13(9):2634-44. PubMed ID: 22937726
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Optimized Elastic Network Models With Direct Characterization of Inter-Residue Cooperativity for Protein Dynamics.
    Zhang H; Shan G; Yang B
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(2):1064-1074. PubMed ID: 32915744
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Large-scale comparison of protein essential dynamics from molecular dynamics simulations and coarse-grained normal mode analyses.
    Ahmed A; Villinger S; Gohlke H
    Proteins; 2010 Dec; 78(16):3341-52. PubMed ID: 20848551
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.
    Sen TZ; Feng Y; Garcia JV; Kloczkowski A; Jernigan RL
    J Chem Theory Comput; 2006; 2(3):696-704. PubMed ID: 17710199
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.