These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

116 related articles for article (PubMed ID: 26592296)

  • 21. Parameterizing elastic network models to capture the dynamics of proteins.
    Koehl P; Orland H; Delarue M
    J Comput Chem; 2021 Sep; 42(23):1643-1661. PubMed ID: 34117647
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein.
    Wych DC; Fraser JS; Mobley DL; Wall ME
    Struct Dyn; 2019 Nov; 6(6):064704. PubMed ID: 31867408
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A kinetic model for the internal motions of proteins: diffusion between multiple harmonic wells.
    Amadei A; de Groot BL; Ceruso MA; Paci M; Di Nola A; Berendsen HJ
    Proteins; 1999 May; 35(3):283-92. PubMed ID: 10328263
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Domain decomposition-based structural condensation of large protein structures for understanding their conformational dynamics.
    Kim JI; Na S; Eom K
    J Comput Chem; 2011 Jan; 32(1):161-9. PubMed ID: 20645300
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Generalized correlation for biomolecular dynamics.
    Lange OF; Grubmüller H
    Proteins; 2006 Mar; 62(4):1053-61. PubMed ID: 16355416
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Identification of motions in membrane proteins by elastic network models and their experimental validation.
    Isin B; Tirupula KC; Oltvai ZN; Klein-Seetharaman J; Bahar I
    Methods Mol Biol; 2012; 914():285-317. PubMed ID: 22976035
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.
    Stember JN; Wriggers W
    J Chem Phys; 2009 Aug; 131(7):074112. PubMed ID: 19708737
    [TBL] [Abstract][Full Text] [Related]  

  • 28. CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
    Kenzaki H; Koga N; Hori N; Kanada R; Li W; Okazaki K; Yao XQ; Takada S
    J Chem Theory Comput; 2011 Jun; 7(6):1979-89. PubMed ID: 26596457
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Intrinsic Dynamics Analysis of a DNA Octahedron by Elastic Network Model.
    Hu G; He L; Iacovelli F; Falconi M
    Molecules; 2017 Jan; 22(1):. PubMed ID: 28275219
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions.
    Hafner J; Zheng W
    J Chem Phys; 2010 Jan; 132(1):014111. PubMed ID: 20078153
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Coarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectives.
    Yang LW; Chng CP
    Bioinform Biol Insights; 2008 Mar; 2():25-45. PubMed ID: 19812764
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Protein dynamics determined by backbone conformation and atom packing.
    Higo J; Umeyama H
    Protein Eng; 1997 Apr; 10(4):373-80. PubMed ID: 9194161
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Dynamics of large proteins through hierarchical levels of coarse-grained structures.
    Doruker P; Jernigan RL; Bahar I
    J Comput Chem; 2002 Jan; 23(1):119-27. PubMed ID: 11913377
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Fluctuation matching approach for elastic network model and structure-based model of biomacromolecules.
    Bope CD; Tong D; Li X; Lu L
    Prog Biophys Mol Biol; 2017 Sep; 128():100-112. PubMed ID: 28043838
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Elastic Network Models are Robust to Variations in Formalism.
    Leioatts N; Romo TD; Grossfield A
    J Chem Theory Comput; 2012 Jul; 8(7):2424-2434. PubMed ID: 22924033
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Kinetic and thermodynamic DNA elasticity at micro- and mesoscopic scales.
    Mazur AK
    J Phys Chem B; 2009 Feb; 113(7):2077-89. PubMed ID: 19209945
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Elastic network normal modes provide a basis for protein structure refinement.
    Gniewek P; Kolinski A; Jernigan RL; Kloczkowski A
    J Chem Phys; 2012 May; 136(19):195101. PubMed ID: 22612113
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Efficient prediction of protein conformational pathways based on the hybrid elastic network model.
    Seo S; Jang Y; Qian P; Liu WK; Choi JB; Lim BS; Kim MK
    J Mol Graph Model; 2014 Feb; 47():25-36. PubMed ID: 24296313
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Global ribosome motions revealed with elastic network model.
    Wang Y; Rader AJ; Bahar I; Jernigan RL
    J Struct Biol; 2004 Sep; 147(3):302-14. PubMed ID: 15450299
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Deriving correlated motions in proteins from X-ray structure refinement by using TLS parameters.
    Liu YY; Shih CH; Hwang JK; Chen CC
    Gene; 2013 Apr; 518(1):52-8. PubMed ID: 23270923
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.