These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
155 related articles for article (PubMed ID: 26592996)
21. ProGenGrid: a grid-enabled platform for bioinformatics. Aloisio G; Cafaro M; Fiore S; Mirto M Stud Health Technol Inform; 2005; 112():113-26. PubMed ID: 15923721 [TBL] [Abstract][Full Text] [Related]
22. A Grid-based solution for management and analysis of microarrays in distributed experiments. Porro I; Torterolo L; Corradi L; Fato M; Papadimitropoulos A; Scaglione S; Schenone A; Viti F BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S7. PubMed ID: 17430574 [TBL] [Abstract][Full Text] [Related]
23. Enabling grand-canonical Monte Carlo: extending the flexibility of GROMACS through the GromPy python interface module. Pool R; Heringa J; Hoefling M; Schulz R; Smith JC; Feenstra KA J Comput Chem; 2012 May; 33(12):1207-14. PubMed ID: 22370965 [TBL] [Abstract][Full Text] [Related]
25. Molecular dynamics simulation by GROMACS using GUI plugin for PyMOL. Makarewicz T; Kaźmierkiewicz R J Chem Inf Model; 2013 May; 53(5):1229-34. PubMed ID: 23611462 [TBL] [Abstract][Full Text] [Related]
26. The Virtual Kidney: an eScience interface and Grid portal. Harris PJ; Buyya R; Chu X; Kobialka T; Kazmierczak E; Moss R; Appelbe W; Hunter PJ; Thomas SR Philos Trans A Math Phys Eng Sci; 2009 Jun; 367(1896):2141-59. PubMed ID: 19414450 [TBL] [Abstract][Full Text] [Related]
27. Gro2mat: a package to efficiently read gromacs output in MATLAB. Dien H; Deane CM; Knapp B J Comput Chem; 2014 Jul; 35(20):1528-31. PubMed ID: 24920464 [TBL] [Abstract][Full Text] [Related]
28. Using the grid to analyze the pharmacokinetic modelling after contrast administration in dynamic MRI. Blanquer I; Hernández V; Monleón D; Carbonell J; Moratal D; Celda B; Robles M; Martí-Bonmatí L Stud Health Technol Inform; 2006; 120():82-92. PubMed ID: 16823125 [TBL] [Abstract][Full Text] [Related]
29. BRIDGE: An Open Platform for Reproducible High-Throughput Free Energy Simulations. Senapathi T; Suruzhon M; Barnett CB; Essex J; Naidoo KJ J Chem Inf Model; 2020 Nov; 60(11):5290-5295. PubMed ID: 32810405 [TBL] [Abstract][Full Text] [Related]
30. GPS@ bioinformatics portal: from network to EGEE grid. Blanchet C; Lefort V; Combet C; Deléage G Stud Health Technol Inform; 2006; 120():187-93. PubMed ID: 16823137 [TBL] [Abstract][Full Text] [Related]
31. A Python tool to set up relative free energy calculations in GROMACS. Klimovich PV; Mobley DL J Comput Aided Mol Des; 2015 Nov; 29(11):1007-14. PubMed ID: 26487189 [TBL] [Abstract][Full Text] [Related]
32. Biowep: a workflow enactment portal for bioinformatics applications. Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563 [TBL] [Abstract][Full Text] [Related]
33. Evaluation of a grid based molecular dynamics approach for polypeptide simulations. Merelli I; Morra G; Milanesi L IEEE Trans Nanobioscience; 2007 Sep; 6(3):229-34. PubMed ID: 17926781 [TBL] [Abstract][Full Text] [Related]
34. gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support. Irrgang ME; Davis C; Kasson PM PLoS Comput Biol; 2022 Feb; 18(2):e1009835. PubMed ID: 35157693 [TBL] [Abstract][Full Text] [Related]
35. Frontiers in molecular dynamics simulations of DNA. Pérez A; Luque FJ; Orozco M Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782 [TBL] [Abstract][Full Text] [Related]
36. A GRID-derived water network stabilizes molecular dynamics computer simulations of a protease. Wallnoefer HG; Liedl KR; Fox T J Chem Inf Model; 2011 Nov; 51(11):2860-7. PubMed ID: 21970362 [TBL] [Abstract][Full Text] [Related]
37. The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations. Krüger J; Grunzke R; Gesing S; Breuers S; Brinkmann A; de la Garza L; Kohlbacher O; Kruse M; Nagel WE; Packschies L; Müller-Pfefferkorn R; Schäfer P; Schärfe C; Steinke T; Schlemmer T; Warzecha KD; Zink A; Herres-Pawlis S J Chem Theory Comput; 2014 Jun; 10(6):2232-45. PubMed ID: 26580747 [TBL] [Abstract][Full Text] [Related]