These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 26593345)

  • 21. Enhanced sampling algorithms.
    Mitsutake A; Mori Y; Okamoto Y
    Methods Mol Biol; 2013; 924():153-95. PubMed ID: 23034749
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Bayesian ensemble refinement by replica simulations and reweighting.
    Hummer G; Köfinger J
    J Chem Phys; 2015 Dec; 143(24):243150. PubMed ID: 26723635
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Improving Convergence of Replica-Exchange Simulations through Coupling to a High-Temperature Structure Reservoir.
    Okur A; Roe DR; Cui G; Hornak V; Simmerling C
    J Chem Theory Comput; 2007 Mar; 3(2):557-68. PubMed ID: 26637035
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Molecular simulations by generalized-ensemble algorithms in isothermal-isobaric ensemble.
    Yamauchi M; Mori Y; Okumura H
    Biophys Rev; 2019 Jun; 11(3):457-469. PubMed ID: 31115865
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Comparison between integrated and parallel tempering methods in enhanced sampling simulations.
    Yang L; Shao Q; Gao YQ
    J Chem Phys; 2009 Mar; 130(12):124111. PubMed ID: 19334812
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Continuous Tempering Molecular Dynamics: A Deterministic Approach to Simulated Tempering.
    Lenner N; Mathias G
    J Chem Theory Comput; 2016 Feb; 12(2):486-98. PubMed ID: 26760910
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Efficiency of Adaptive Temperature-Based Replica Exchange for Sampling Large-Scale Protein Conformational Transitions.
    Zhang W; Chen J
    J Chem Theory Comput; 2013 Jun; 9(6):2849-56. PubMed ID: 26583873
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Drug design by generalized-ensemble simulations.
    Okamoto Y
    Curr Pharm Des; 2011; 17(17):1758-72. PubMed ID: 21619524
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Convergence of replica exchange molecular dynamics.
    Zhang W; Wu C; Duan Y
    J Chem Phys; 2005 Oct; 123(15):154105. PubMed ID: 16252940
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Order parameter free enhanced sampling of the vapor-liquid transition using the generalized replica exchange method.
    Lu Q; Kim J; Straub JE
    J Chem Phys; 2013 Mar; 138(10):104119. PubMed ID: 23514477
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Enhanced Conformational Sampling in Molecular Dynamics Simulations of Solvated Peptides: Fragment-Based Local Elevation Umbrella Sampling.
    Hansen HS; Daura X; Hünenberger PH
    J Chem Theory Comput; 2010 Sep; 6(9):2598-621. PubMed ID: 26616064
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Convective Replica-Exchange in Ergodic Regimes.
    Signorini GF; Giovannelli E; Spill YG; Nilges M; Chelli R
    J Chem Theory Comput; 2014 Mar; 10(3):953-8. PubMed ID: 26580174
    [TBL] [Abstract][Full Text] [Related]  

  • 33. A generalized linear response framework for expanded ensemble and replica exchange simulations.
    Radak BK; Suh D; Roux B
    J Chem Phys; 2018 Aug; 149(7):072315. PubMed ID: 30134700
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Calculation of absolute protein-ligand binding free energy using distributed replica sampling.
    Rodinger T; Howell PL; Pomès R
    J Chem Phys; 2008 Oct; 129(15):155102. PubMed ID: 19045232
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Investigating the solid-liquid phase transition of water nanofilms using the generalized replica exchange method.
    Lu Q; Kim J; Farrell JD; Wales DJ; Straub JE
    J Chem Phys; 2014 Nov; 141(18):18C525. PubMed ID: 25399190
    [TBL] [Abstract][Full Text] [Related]  

  • 36. On the use of a weak-coupling thermostat in replica-exchange molecular dynamics simulations.
    Lin Z; van Gunsteren WF
    J Chem Phys; 2015 Jul; 143(3):034110. PubMed ID: 26203017
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A divide-and-conquer strategy to improve diffusion sampling in generalized ensemble simulations.
    Min D; Yang W
    J Chem Phys; 2008 Mar; 128(9):094106. PubMed ID: 18331086
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Replica exchange methods in biomineral simulations.
    Wallace AF
    Methods Enzymol; 2013; 532():71-93. PubMed ID: 24188763
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Fast recovery of free energy landscapes via diffusion-map-directed molecular dynamics.
    Preto J; Clementi C
    Phys Chem Chem Phys; 2014 Sep; 16(36):19181-91. PubMed ID: 24955434
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Enhanced conformational sampling of carbohydrates by Hamiltonian replica-exchange simulation.
    Mishra SK; Kara M; Zacharias M; Koca J
    Glycobiology; 2014 Jan; 24(1):70-84. PubMed ID: 24134878
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.