These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
22. Using the Wimley-White Hydrophobicity Scale as a Direct Quantitative Test of Force Fields: The MARTINI Coarse-Grained Model. Singh G; Tieleman DP J Chem Theory Comput; 2011 Jul; 7(7):2316-24. PubMed ID: 26606499 [TBL] [Abstract][Full Text] [Related]
23. Coarse-grained molecular dynamics simulation of self-assembly and surface adsorption of ionic surfactants using an implicit water model. Wang S; Larson RG Langmuir; 2015 Feb; 31(4):1262-71. PubMed ID: 25565113 [TBL] [Abstract][Full Text] [Related]
24. Improved Parameters for the Martini Coarse-Grained Protein Force Field. de Jong DH; Singh G; Bennett WF; Arnarez C; Wassenaar TA; Schäfer LV; Periole X; Tieleman DP; Marrink SJ J Chem Theory Comput; 2013 Jan; 9(1):687-97. PubMed ID: 26589065 [TBL] [Abstract][Full Text] [Related]
25. Inhibition of peptide aggregation by lipids: insights from coarse-grained molecular simulations. Hung A; Yarovsky I J Mol Graph Model; 2011 Feb; 29(5):597-607. PubMed ID: 21146432 [TBL] [Abstract][Full Text] [Related]
26. Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: difference between atomistic and coarse-grained simulations. Nishizawa M; Nishizawa K J Chem Phys; 2014 Aug; 141(7):075101. PubMed ID: 25149815 [TBL] [Abstract][Full Text] [Related]
27. Optimizing Gō-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid Membrane. Mahmood MI; Poma AB; Okazaki KI Front Mol Biosci; 2021; 8():619381. PubMed ID: 33693028 [TBL] [Abstract][Full Text] [Related]
28. Coarse-grained molecular dynamics simulations of the sphere to rod transition in surfactant micelles. Sangwai AV; Sureshkumar R Langmuir; 2011 Jun; 27(11):6628-38. PubMed ID: 21524093 [TBL] [Abstract][Full Text] [Related]
29. The MARTINI Coarse-Grained Force Field: Extension to Proteins. Monticelli L; Kandasamy SK; Periole X; Larson RG; Tieleman DP; Marrink SJ J Chem Theory Comput; 2008 May; 4(5):819-34. PubMed ID: 26621095 [TBL] [Abstract][Full Text] [Related]
30. Solution NMR analysis of the interaction between the actinoporin sticholysin I and DHPC micelles--correlation with backbone dynamics. López-Castilla A; Pazos F; Schreier S; Pires JR Proteins; 2014 Jun; 82(6):1022-34. PubMed ID: 24218049 [TBL] [Abstract][Full Text] [Related]
31. A sumatriptan coarse-grained model to explore different environments: interplay with experimental techniques. Wood I; Albano JMR; Filho PLO; Couto VM; de Farias MA; Portugal RV; de Paula E; Oliveira CLP; Pickholz M Eur Biophys J; 2018 Jul; 47(5):561-571. PubMed ID: 29376196 [TBL] [Abstract][Full Text] [Related]
32. Quantitative Prediction of the Structure and Viscosity of Aqueous Micellar Solutions of Ionic Surfactants: A Combined Approach Based on Coarse-Grained MARTINI Simulations Followed by Reverse-Mapped All-Atom Molecular Dynamics Simulations. Peroukidis SD; Tsalikis DG; Noro MG; Stott IP; Mavrantzas VG J Chem Theory Comput; 2020 May; 16(5):3363-3372. PubMed ID: 32268064 [TBL] [Abstract][Full Text] [Related]
33. Coarse-Grained Force Fields from the Perspective of Statistical Mechanics: Better Understanding of the Origins of a MARTINI Hangover. Jarin Z; Newhouse J; Voth GA J Chem Theory Comput; 2021 Feb; 17(2):1170-1180. PubMed ID: 33475352 [TBL] [Abstract][Full Text] [Related]
35. Coarse-grained force field for simulating polymer-tethered silsesquioxane self-assembly in solution. Chan ER; Striolo A; McCabe C; Cummings PT; Glotzer SC J Chem Phys; 2007 Sep; 127(11):114102. PubMed ID: 17887823 [TBL] [Abstract][Full Text] [Related]
36. Membrane Protein Simulations Using AMBER Force Field and Berger Lipid Parameters. Cordomí A; Caltabiano G; Pardo L J Chem Theory Comput; 2012 Mar; 8(3):948-58. PubMed ID: 26593357 [TBL] [Abstract][Full Text] [Related]
37. Martini Force Field Parameters for Glycolipids. López CA; Sovova Z; van Eerden FJ; de Vries AH; Marrink SJ J Chem Theory Comput; 2013 Mar; 9(3):1694-708. PubMed ID: 26587629 [TBL] [Abstract][Full Text] [Related]
38. The Martini coarse-grained force field. Periole X; Marrink SJ Methods Mol Biol; 2013; 924():533-65. PubMed ID: 23034762 [TBL] [Abstract][Full Text] [Related]