These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

72 related articles for article (PubMed ID: 26593651)

  • 1. Ultrametricity in Protein Folding Dynamics.
    Scalco R; Caflisch A
    J Chem Theory Comput; 2012 May; 8(5):1580-8. PubMed ID: 26593651
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Reaction rate theory: what it was, where is it today, and where is it going?
    Pollak E; Talkner P
    Chaos; 2005 Jun; 15(2):26116. PubMed ID: 16035918
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Identification of the protein folding transition state from molecular dynamics trajectories.
    Muff S; Caflisch A
    J Chem Phys; 2009 Mar; 130(12):125104. PubMed ID: 19334897
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Transition state theory approach to polymer escape from a one dimensional potential well.
    Mökkönen H; Ikonen T; Ala-Nissila T; Jónsson H
    J Chem Phys; 2015 Jun; 142(22):224906. PubMed ID: 26071730
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The nature of the free energy barriers to two-state folding.
    Akmal A; Muñoz V
    Proteins; 2004 Oct; 57(1):142-52. PubMed ID: 15326600
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Derivation of a Markov state model of the dynamics of a protein-like chain immersed in an implicit solvent.
    Schofield J; Bayat H
    J Chem Phys; 2014 Sep; 141(9):095101. PubMed ID: 25194395
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Free energy barriers for escape of water molecules from protein hydration layer.
    Roy S; Bagchi B
    J Phys Chem B; 2012 Mar; 116(9):2958-68. PubMed ID: 22288939
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Theoretical volume profiles as a tool for probing transition states: folding kinetics.
    Wiebe H; Weinberg N
    J Chem Phys; 2014 Mar; 140(12):124105. PubMed ID: 24697422
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The changing nature of the protein folding transition state: implications for the shape of the free-energy profile for folding.
    Oliveberg M; Tan YJ; Silow M; Fersht AR
    J Mol Biol; 1998 Apr; 277(4):933-43. PubMed ID: 9545382
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transition state theory: variational formulation, dynamical corrections, and error estimates.
    Vanden-Eijnden E; Tal FA
    J Chem Phys; 2005 Nov; 123(18):184103. PubMed ID: 16292895
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Colored noise, folding rates and departure from Kramers' behavior.
    Chandra Bag B; Hu CK; Suan Li M
    Phys Chem Chem Phys; 2010 Oct; 12(37):11753-62. PubMed ID: 20725687
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Equilibrium distribution from distributed computing (simulations of protein folding).
    Scalco R; Caflisch A
    J Phys Chem B; 2011 May; 115(19):6358-65. PubMed ID: 21517045
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Examining the limits of time reweighting and Kramers' rate theory to obtain correct kinetics from accelerated molecular dynamics.
    Xin Y; Doshi U; Hamelberg D
    J Chem Phys; 2010 Jun; 132(22):224101. PubMed ID: 20550384
    [TBL] [Abstract][Full Text] [Related]  

  • 14. One-dimensional free-energy profiles of complex systems: progress variables that preserve the barriers.
    Krivov SV; Karplus M
    J Phys Chem B; 2006 Jun; 110(25):12689-98. PubMed ID: 16800603
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accuracy of a Markov state model generated by searching for basin escape pathways.
    Bhute VJ; Chatterjee A
    J Chem Phys; 2013 Feb; 138(8):084103. PubMed ID: 23464136
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Estimation of protein folding free energy barriers from calorimetric data by multi-model Bayesian analysis.
    Naganathan AN; Perez-Jimenez R; Muñoz V; Sanchez-Ruiz JM
    Phys Chem Chem Phys; 2011 Oct; 13(38):17064-76. PubMed ID: 21769353
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Free energy surfaces from single-distance information.
    Schuetz P; Wuttke R; Schuler B; Caflisch A
    J Phys Chem B; 2010 Nov; 114(46):15227-35. PubMed ID: 20964427
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Global dynamics and transition state theories: Comparative study of reaction rate constants for gas-phase chemical reactions.
    Ju LP; Han KL; Zhang JZ
    J Comput Chem; 2009 Jan; 30(2):305-16. PubMed ID: 18615407
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The transition state transit time of WW domain folding is controlled by energy landscape roughness.
    Liu F; Nakaema M; Gruebele M
    J Chem Phys; 2009 Nov; 131(19):195101. PubMed ID: 19929078
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Kramers' escape problem for fractional Klein-Kramers equation with tempered α-stable waiting times.
    Gajda J; Magdziarz M
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Aug; 84(2 Pt 1):021137. PubMed ID: 21928979
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.