BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

113 related articles for article (PubMed ID: 26605696)

  • 1. Accurate Estimation of the Entropy of Rotation-Translation Probability Distributions.
    Fogolari F; Dongmo Foumthuim CJ; Fortuna S; Soler MA; Corazza A; Esposito G
    J Chem Theory Comput; 2016 Jan; 12(1):1-8. PubMed ID: 26605696
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Distance-Based Configurational Entropy of Proteins from Molecular Dynamics Simulations.
    Fogolari F; Corazza A; Fortuna S; Soler MA; VanSchouwen B; Brancolini G; Corni S; Melacini G; Esposito G
    PLoS One; 2015; 10(7):e0132356. PubMed ID: 26177039
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Entropy of Two-Molecule Correlated Translational-Rotational Motions Using the
    Fogolari F; Esposito G; Tidor B
    J Chem Theory Comput; 2021 May; 17(5):3039-3051. PubMed ID: 33856225
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Entropic benefit of a cross-link in protein association.
    Zaman MH; Berry RS; Sosnick TR
    Proteins; 2002 Aug; 48(2):341-51. PubMed ID: 12112701
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Calculation of configurational entropy with a Boltzmann-quasiharmonic model: the origin of high-affinity protein-ligand binding.
    Harpole KW; Sharp KA
    J Phys Chem B; 2011 Aug; 115(30):9461-72. PubMed ID: 21678965
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparing distance metrics for rotation using the k-nearest neighbors algorithm for entropy estimation.
    Huggins DJ
    J Comput Chem; 2014 Feb; 35(5):377-85. PubMed ID: 24311273
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PDB2ENTROPY and PDB2TRENT: Conformational and Translational-Rotational Entropy from Molecular Ensembles.
    Fogolari F; Maloku O; Dongmo Foumthuim CJ; Corazza A; Esposito G
    J Chem Inf Model; 2018 Jul; 58(7):1319-1324. PubMed ID: 29897235
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Contribution of translational and rotational motions to molecular association in aqueous solution.
    Yu YB; Privalov PL; Hodges RS
    Biophys J; 2001 Sep; 81(3):1632-42. PubMed ID: 11509376
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Single water entropy: hydrophobic crossover and application to drug binding.
    Sasikala WD; Mukherjee A
    J Phys Chem B; 2014 Sep; 118(36):10553-64. PubMed ID: 25133988
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Entropic cost of protein-ligand binding and its dependence on the entropy in solution.
    Irudayam SJ; Henchman RH
    J Phys Chem B; 2009 Apr; 113(17):5871-84. PubMed ID: 19351118
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Efficient calculation of configurational entropy from molecular simulations by combining the mutual-information expansion and nearest-neighbor methods.
    Hnizdo V; Tan J; Killian BJ; Gilson MK
    J Comput Chem; 2008 Jul; 29(10):1605-14. PubMed ID: 18293293
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Efficient Determination of Relative Entropy Using Combined Temperature and Hamiltonian Replica-Exchange Molecular Dynamics.
    Jo S; Chipot C; Roux B
    J Chem Theory Comput; 2015 May; 11(5):2234-44. PubMed ID: 26574422
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparative estimation of vibrational entropy changes in proteins through normal modes analysis.
    Carrington BJ; Mancera RL
    J Mol Graph Model; 2004 Oct; 23(2):167-74. PubMed ID: 15363458
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The consequences of translational and rotational entropy lost by small molecules on binding to proteins.
    Murray CW; Verdonk ML
    J Comput Aided Mol Des; 2002 Oct; 16(10):741-53. PubMed ID: 12650591
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Estimation of absolute solvent and solvation shell entropies via permutation reduction.
    Reinhard F; Grubmüller H
    J Chem Phys; 2007 Jan; 126(1):014102. PubMed ID: 17212485
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The normal-mode entropy in the MM/GBSA method: effect of system truncation, buffer region, and dielectric constant.
    Genheden S; Kuhn O; Mikulskis P; Hoffmann D; Ryde U
    J Chem Inf Model; 2012 Aug; 52(8):2079-88. PubMed ID: 22817270
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Estimating Translational and Orientational Entropies Using the k-Nearest Neighbors Algorithm.
    Huggins DJ
    J Chem Theory Comput; 2014 Sep; 10(9):3617-25. PubMed ID: 26588506
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PARENT: A Parallel Software Suite for the Calculation of Configurational Entropy in Biomolecular Systems.
    Fleck M; Polyansky AA; Zagrovic B
    J Chem Theory Comput; 2016 Apr; 12(4):2055-65. PubMed ID: 26989950
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Conformational entropy of biomolecules: beyond the quasi-harmonic approximation.
    Numata J; Wan M; Knapp EW
    Genome Inform; 2007; 18():192-205. PubMed ID: 18546487
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Predicting conformational entropy of bond vectors in proteins by networks of coupled rotators.
    Dhulesia A; Bodenhausen G; Abergel D
    J Chem Phys; 2008 Sep; 129(9):095107. PubMed ID: 19044895
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.