619 related articles for article (PubMed ID: 26607490)
1. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
[TBL] [Abstract][Full Text] [Related]
2. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
[TBL] [Abstract][Full Text] [Related]
3. Combining dependent P-values with an empirical adaptation of Brown's method.
Poole W; Gibbs DL; Shmulevich I; Bernard B; Knijnenburg TA
Bioinformatics; 2016 Sep; 32(17):i430-i436. PubMed ID: 27587659
[TBL] [Abstract][Full Text] [Related]
4. PrInCE: an R/Bioconductor package for protein-protein interaction network inference from co-fractionation mass spectrometry data.
Skinnider MA; Cai C; Stacey RG; Foster LJ
Bioinformatics; 2021 Sep; 37(17):2775-2777. PubMed ID: 33471077
[TBL] [Abstract][Full Text] [Related]
5. LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.
Seyres D; Darbo E; Perrin L; Herrmann C; González A
Bioinformatics; 2016 Apr; 32(7):1091-3. PubMed ID: 26628586
[TBL] [Abstract][Full Text] [Related]
6. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
Gu Z; Eils R; Schlesner M
Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
[TBL] [Abstract][Full Text] [Related]
7. DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis.
Yu G; Wang LG; Yan GR; He QY
Bioinformatics; 2015 Feb; 31(4):608-9. PubMed ID: 25677125
[TBL] [Abstract][Full Text] [Related]
8. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
[TBL] [Abstract][Full Text] [Related]
9. InterMineR: an R package for InterMine databases.
Kyritsis KA; Wang B; Sullivan J; Lyne R; Micklem G
Bioinformatics; 2019 Sep; 35(17):3206-3207. PubMed ID: 30668641
[TBL] [Abstract][Full Text] [Related]
10. msa: an R package for multiple sequence alignment.
Bodenhofer U; Bonatesta E; Horejš-Kainrath C; Hochreiter S
Bioinformatics; 2015 Dec; 31(24):3997-9. PubMed ID: 26315911
[TBL] [Abstract][Full Text] [Related]
11. TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets.
Puente-Santamaria L; Wasserman WW; Del Peso L
Bioinformatics; 2019 Dec; 35(24):5339-5340. PubMed ID: 31347689
[TBL] [Abstract][Full Text] [Related]
12. GeneExpressionSignature: an R package for discovering functional connections using gene expression signatures.
Li F; Cao Y; Han L; Cui X; Xie D; Wang S; Bo X
OMICS; 2013 Feb; 17(2):116-8. PubMed ID: 23374109
[TBL] [Abstract][Full Text] [Related]
13. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
Fournier F; Joly Beauparlant C; Paradis R; Droit A
Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
[TBL] [Abstract][Full Text] [Related]
14. oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.
Sanges R; Cordero F; Calogero RA
Bioinformatics; 2007 Dec; 23(24):3406-8. PubMed ID: 17875544
[TBL] [Abstract][Full Text] [Related]
15. PharmacoGx: an R package for analysis of large pharmacogenomic datasets.
Smirnov P; Safikhani Z; El-Hachem N; Wang D; She A; Olsen C; Freeman M; Selby H; Gendoo DM; Grossmann P; Beck AH; Aerts HJ; Lupien M; Goldenberg A; Haibe-Kains B
Bioinformatics; 2016 Apr; 32(8):1244-6. PubMed ID: 26656004
[TBL] [Abstract][Full Text] [Related]
16. flowCL: ontology-based cell population labelling in flow cytometry.
Courtot M; Meskas J; Diehl AD; Droumeva R; Gottardo R; Jalali A; Taghiyar MJ; Maecker HT; McCoy JP; Ruttenberg A; Scheuermann RH; Brinkman RR
Bioinformatics; 2015 Apr; 31(8):1337-9. PubMed ID: 25481008
[TBL] [Abstract][Full Text] [Related]
17. RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.
Del Carratore F; Jankevics A; Eisinga R; Heskes T; Hong F; Breitling R
Bioinformatics; 2017 Sep; 33(17):2774-2775. PubMed ID: 28481966
[TBL] [Abstract][Full Text] [Related]
18. KnowSeq R-Bioc package: The automatic smart gene expression tool for retrieving relevant biological knowledge.
Castillo-Secilla D; Gálvez JM; Carrillo-Perez F; Verona-Almeida M; Redondo-Sánchez D; Ortuno FM; Herrera LJ; Rojas I
Comput Biol Med; 2021 Jun; 133():104387. PubMed ID: 33872966
[TBL] [Abstract][Full Text] [Related]
19. EnMCB: an R/bioconductor package for predicting disease progression based on methylation correlated blocks using ensemble models.
Yu X; Kong DX
Bioinformatics; 2021 Nov; 37(22):4282-4284. PubMed ID: 34050729
[TBL] [Abstract][Full Text] [Related]
20. Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Gu Z; Eils R; Schlesner M
Bioinformatics; 2016 Sep; 32(18):2847-9. PubMed ID: 27207943
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
