These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

69 related articles for article (PubMed ID: 26613157)

  • 1. Effects of Hydration on the Conformational Energy Landscape of the Pentapeptide Met-Enkephalin.
    Ramya L; Gautham N
    J Chem Theory Comput; 2009 Aug; 5(8):2180-90. PubMed ID: 26613157
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Conformational space exploration of Met- and Leu-enkephalin using the MOLS method, molecular dynamics, and Monte Carlo simulation--a comparative study.
    Ramya L; Gautham N
    Biopolymers; 2012 Mar; 97(3):165-76. PubMed ID: 21953081
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conformational studies on enkephalins using the MOLS technique.
    Vengadesan K; Gautham N
    Biopolymers; 2004 Aug; 74(6):476-94. PubMed ID: 15274091
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exploring the conformational space of protein loops using a mean field technique with MOLS sampling.
    Kanagasabai V; Arunachalam J; Prasad PA; Gautham N
    Proteins; 2007 Jun; 67(4):908-21. PubMed ID: 17357159
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Empirical solvation models in the context of conformational energy searches: application to bovine pancreatic trypsin inhibitor.
    Williams RL; Vila J; Perrot G; Scheraga HA
    Proteins; 1992 Sep; 14(1):110-9. PubMed ID: 1384032
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
    Zhou R
    Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Distinct role of hydration water in protein misfolding and aggregation revealed by fluctuating thermodynamics analysis.
    Chong SH; Ham S
    Acc Chem Res; 2015 Apr; 48(4):956-65. PubMed ID: 25844814
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conformational analysis of endothelin-1: effects of solvation free energy.
    Hempel JC; Fine RM; Hassan M; Ghoul W; Guaragna A; Koerber SC; Li Z; Hagler AT
    Biopolymers; 1995 Sep; 36(3):283-301. PubMed ID: 7669916
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computations of Absolute Solvation Free Energies of Small Molecules Using Explicit and Implicit Solvent Model.
    Shivakumar D; Deng Y; Roux B
    J Chem Theory Comput; 2009 Apr; 5(4):919-30. PubMed ID: 26609601
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sensitivity of local hydration behaviour and conformational preferences of peptides to choice of water model.
    Nayar D; Chakravarty C
    Phys Chem Chem Phys; 2014 Jun; 16(21):10199-213. PubMed ID: 24695799
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An efficient mean solvation force model for use in molecular dynamics simulations of proteins in aqueous solution.
    Fraternali F; Van Gunsteren WF
    J Mol Biol; 1996 Mar; 256(5):939-48. PubMed ID: 8601844
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MOLS sampling and its applications in structural biophysics.
    Ramya L; Nehru Viji S; Arun Prasad P; Kanagasabai V; Gautham N
    Biophys Rev; 2010 Dec; 2(4):169-179. PubMed ID: 28510038
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Particle-Based Implicit Solvent Model for Biosimulations:  Application to Proteins and Nucleic Acids Hydration.
    Basdevant N; Ha-Duong T; Borgis D
    J Chem Theory Comput; 2006 Nov; 2(6):1646-56. PubMed ID: 26627035
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Hamiltonian and distance replica exchange method studies of Met-enkephalin.
    Su L; Cukier RI
    J Phys Chem B; 2007 Oct; 111(42):12310-21. PubMed ID: 17918879
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Atomic decomposition of the protein solvation free energy and its application to amyloid-beta protein in water.
    Chong SH; Ham S
    J Chem Phys; 2011 Jul; 135(3):034506. PubMed ID: 21787012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exploring peptide energy landscapes: a test of force fields and implicit solvent models.
    Steinbach PJ
    Proteins; 2004 Dec; 57(4):665-77. PubMed ID: 15390266
    [TBL] [Abstract][Full Text] [Related]  

  • 17. On the multiple-minima problem in the conformational analysis of polypeptides. V. Application of the self-consistent electrostatic field and the electrostatically driven Monte Carlo methods to bovine pancreatic trypsin inhibitor.
    Ripoll DR; Piela L; Vásquez M; Scheraga HA
    Proteins; 1991; 10(3):188-98. PubMed ID: 1715563
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution.
    Williams HE; Searle MS
    J Mol Biol; 1999 Jul; 290(3):699-716. PubMed ID: 10395824
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SM6:  A Density Functional Theory Continuum Solvation Model for Calculating Aqueous Solvation Free Energies of Neutrals, Ions, and Solute-Water Clusters.
    Kelly CP; Cramer CJ; Truhlar DG
    J Chem Theory Comput; 2005 Nov; 1(6):1133-52. PubMed ID: 26631657
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MOLS--a program to explore the potential energy surface of a peptide and locate its low energy conformations.
    Prasad PA; Vengadesan K; Gautham N
    In Silico Biol; 2005; 5(4):401-5. PubMed ID: 16268784
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.