These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

89 related articles for article (PubMed ID: 26615944)

  • 1. Starting-Condition Dependence of Order Parameters Derived from Molecular Dynamics Simulations.
    Genheden S; Diehl C; Akke M; Ryde U
    J Chem Theory Comput; 2010 Jul; 6(7):2176-90. PubMed ID: 26615944
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Motions and entropies in proteins as seen in NMR relaxation experiments and molecular dynamics simulations.
    Allnér O; Foloppe N; Nilsson L
    J Phys Chem B; 2015 Jan; 119(3):1114-28. PubMed ID: 25350574
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular conformations in the pentasaccharide LNF-1 derived from NMR spectroscopy and molecular dynamics simulations.
    Säwén E; Stevensson B; Ostervall J; Maliniak A; Widmalm G
    J Phys Chem B; 2011 Jun; 115(21):7109-21. PubMed ID: 21545157
    [TBL] [Abstract][Full Text] [Related]  

  • 4. HIV-1 TAR RNA spontaneously undergoes relevant apo-to-holo conformational transitions in molecular dynamics and constrained geometrical simulations.
    Fulle S; Christ NA; Kestner E; Gohlke H
    J Chem Inf Model; 2010 Aug; 50(8):1489-501. PubMed ID: 20726603
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Starting-structure dependence of nanosecond timescale intersubstate transitions and reproducibility of MD-derived order parameters.
    Zeiske T; Stafford KA; Friesner RA; Palmer AG
    Proteins; 2013 Mar; 81(3):499-509. PubMed ID: 23161667
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Experimental verification of force fields for molecular dynamics simulations using Gly-Pro-Gly-Gly.
    Aliev AE; Courtier-Murias D
    J Phys Chem B; 2010 Sep; 114(38):12358-75. PubMed ID: 20825228
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3.
    Diehl C; Genheden S; Modig K; Ryde U; Akke M
    J Biomol NMR; 2009 Sep; 45(1-2):157-69. PubMed ID: 19641853
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sampling Performance of Multiple Independent Molecular Dynamics Simulations of an RNA Aptamer.
    Yan S; Peck JM; Ilgu M; Nilsen-Hamilton M; Lamm MH
    ACS Omega; 2020 Aug; 5(32):20187-20201. PubMed ID: 32832772
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accuracy and precision of NMR relaxation experiments and MD simulations for characterizing protein dynamics.
    Philippopoulos M; Mandel AM; Palmer AG; Lim C
    Proteins; 1997 Aug; 28(4):481-93. PubMed ID: 9261865
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks:  Application to the AMBER99SB Force Field.
    Showalter SA; Brüschweiler R
    J Chem Theory Comput; 2007 May; 3(3):961-75. PubMed ID: 26627416
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Backbone motions of free and pheromone-bound major urinary protein I studied by molecular dynamics simulation.
    Macek P; Novak P; Zídek L; Sklenar V
    J Phys Chem B; 2007 May; 111(20):5731-9. PubMed ID: 17465536
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Conformational properties of glucose-based disaccharides investigated using molecular dynamics simulations with local elevation umbrella sampling.
    Perić-Hassler L; Hansen HS; Baron R; Hünenberger PH
    Carbohydr Res; 2010 Aug; 345(12):1781-801. PubMed ID: 20576257
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Isotropic reorientational eigenmode dynamics complements NMR relaxation measurements for RNA.
    Showalter SA; Hall KB
    Methods Enzymol; 2005; 394():465-80. PubMed ID: 15808233
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurately modeling nanosecond protein dynamics requires at least microseconds of simulation.
    Bowman GR
    J Comput Chem; 2016 Mar; 37(6):558-66. PubMed ID: 26077712
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformational flexibility of the MHC class I alpha1-alpha2 domain in peptide bound and free states: a molecular dynamics simulation study.
    Zacharias M; Springer S
    Biophys J; 2004 Oct; 87(4):2203-14. PubMed ID: 15454423
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Mode-coupling smoluchowski dynamics of a double-stranded DNA oligomer.
    Fausti S; La Penna G ; Cuniberti C; Perico A
    Biopolymers; 1999 Nov; 50(6):613-29. PubMed ID: 10508964
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Motion of a disordered polypeptide chain as studied by paramagnetic relaxation enhancements, 15N relaxation, and molecular dynamics simulations: how fast is segmental diffusion in denatured ubiquitin?
    Xue Y; Skrynnikov NR
    J Am Chem Soc; 2011 Sep; 133(37):14614-28. PubMed ID: 21819149
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improved ligand binding energies derived from molecular dynamics: replicate sampling enhances the search of conformational space.
    Adler M; Beroza P
    J Chem Inf Model; 2013 Aug; 53(8):2065-72. PubMed ID: 23845109
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molecular dynamics calculations in explicit water.
    Berndt KD; Güntert P; Wüthrich K
    Proteins; 1996 Mar; 24(3):304-13. PubMed ID: 8778777
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.