These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

137 related articles for article (PubMed ID: 26626388)

  • 21. Conformational Dynamics of Two Natively Unfolded Fragment Peptides: Comparison of the AMBER and CHARMM Force Fields.
    Chen W; Shi C; MacKerell AD; Shen J
    J Phys Chem B; 2015 Jun; 119(25):7902-10. PubMed ID: 26020564
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Thermal unfolding simulations of apo-calmodulin using leap-dynamics.
    Kleinjung J; Fraternali F; Martin SR; Bayley PM
    Proteins; 2003 Mar; 50(4):648-56. PubMed ID: 12577271
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Experimental verification of force fields for molecular dynamics simulations using Gly-Pro-Gly-Gly.
    Aliev AE; Courtier-Murias D
    J Phys Chem B; 2010 Sep; 114(38):12358-75. PubMed ID: 20825228
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Residue-specific force field based on protein coil library. RSFF2: modification of AMBER ff99SB.
    Zhou CY; Jiang F; Wu YD
    J Phys Chem B; 2015 Jan; 119(3):1035-47. PubMed ID: 25358113
    [TBL] [Abstract][Full Text] [Related]  

  • 25. A test on peptide stability of AMBER force fields with implicit solvation.
    Shell MS; Ritterson R; Dill KA
    J Phys Chem B; 2008 Jun; 112(22):6878-86. PubMed ID: 18471007
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.
    Ma B; Nussinov R
    J Mol Biol; 2000 Mar; 296(4):1091-104. PubMed ID: 10686106
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field.
    Chen J; Im W; Brooks CL
    J Am Chem Soc; 2006 Mar; 128(11):3728-36. PubMed ID: 16536547
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Evaluating molecular mechanical potentials for helical peptides and proteins.
    Thompson EJ; DePaul AJ; Patel SS; Sorin EJ
    PLoS One; 2010 Apr; 5(4):e10056. PubMed ID: 20418937
    [TBL] [Abstract][Full Text] [Related]  

  • 29. The intrinsic conformational features of amino acids from a protein coil library and their applications in force field development.
    Jiang F; Han W; Wu YD
    Phys Chem Chem Phys; 2013 Mar; 15(10):3413-28. PubMed ID: 23385383
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Helix-coil transition of alanine peptides in water: force field dependence on the folded and unfolded structures.
    Gnanakaran S; García AE
    Proteins; 2005 Jun; 59(4):773-82. PubMed ID: 15815975
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Determination of alpha-helix and beta-sheet stability in the solid state: a solid-state NMR investigation of poly(L-alanine).
    Henzler Wildman KA; Lee DK; Ramamoorthy A
    Biopolymers; 2002 Aug; 64(5):246-54. PubMed ID: 12115132
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Origin of intrinsic 3(10)-helix versus strand stability in homopolypeptides and its implications for the accuracy of the Amber force field.
    Jagielska A; Skolnick J
    J Comput Chem; 2007 Jul; 28(10):1648-57. PubMed ID: 17342701
    [TBL] [Abstract][Full Text] [Related]  

  • 33. PACE Force Field for Protein Simulations. 2. Folding Simulations of Peptides.
    Han W; Wan CK; Wu YD
    J Chem Theory Comput; 2010 Nov; 6(11):3390-402. PubMed ID: 26617093
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Grid-based backbone correction to the ff12SB protein force field for implicit-solvent simulations.
    Perez A; MacCallum JL; Brini E; Simmerling C; Dill KA
    J Chem Theory Comput; 2015 Oct; 11(10):4770-9. PubMed ID: 26574266
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Implicit solvent models for flexible protein-protein docking by molecular dynamics simulation.
    Wang T; Wade RC
    Proteins; 2003 Jan; 50(1):158-69. PubMed ID: 12471608
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 37. ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB.
    Maier JA; Martinez C; Kasavajhala K; Wickstrom L; Hauser KE; Simmerling C
    J Chem Theory Comput; 2015 Aug; 11(8):3696-713. PubMed ID: 26574453
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Secondary structure and oligomerization behavior of equilibrium unfolding intermediates of the lambda cro repressor.
    Fabian H; Fälber K; Gast K; Reinstädler D; Rogov VV; Naumann D; Zamyatkin DF; Filimonov VV
    Biochemistry; 1999 Apr; 38(17):5633-42. PubMed ID: 10220352
    [TBL] [Abstract][Full Text] [Related]  

  • 39. An efficient mean solvation force model for use in molecular dynamics simulations of proteins in aqueous solution.
    Fraternali F; Van Gunsteren WF
    J Mol Biol; 1996 Mar; 256(5):939-48. PubMed ID: 8601844
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Folding of Top7 in unbiased all-atom Monte Carlo simulations.
    Mohanty S; Meinke JH; Zimmermann O
    Proteins; 2013 Aug; 81(8):1446-56. PubMed ID: 23553942
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.