BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

326 related articles for article (PubMed ID: 26628557)

  • 1. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.
    Tsuji J; Weng Z
    Brief Bioinform; 2016 Nov; 17(6):938-952. PubMed ID: 26628557
    [TBL] [Abstract][Full Text] [Related]  

  • 2. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
    Lee JH; Park SJ; Kenta N
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
    Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
    BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants.
    Grehl C; Wagner M; Lemnian I; Glaser B; Grosse I
    Front Plant Sci; 2020; 11():176. PubMed ID: 32256504
    [TBL] [Abstract][Full Text] [Related]  

  • 6. WALT: fast and accurate read mapping for bisulfite sequencing.
    Chen H; Smith AD; Chen T
    Bioinformatics; 2016 Nov; 32(22):3507-3509. PubMed ID: 27466624
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
    Chen J; Lutsik P; Akulenko R; Walter J; Helms V
    J Bioinform Comput Biol; 2014 Dec; 12(6):1442005. PubMed ID: 25553811
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing.
    Zhou L; Ng HK; Drautz-Moses DI; Schuster SC; Beck S; Kim C; Chambers JC; Loh M
    Sci Rep; 2019 Jul; 9(1):10383. PubMed ID: 31316107
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BCREval: a computational method to estimate the bisulfite conversion ratio in WGBS.
    Zhou J; Zhao M; Sun Z; Wu F; Liu Y; Liu X; He Z; He Q; He Q
    BMC Bioinformatics; 2020 Jan; 21(1):38. PubMed ID: 32005131
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.
    Zou LS; Erdos MR; Taylor DL; Chines PS; Varshney A; ; Parker SCJ; Collins FS; Didion JP
    BMC Genomics; 2018 May; 19(1):390. PubMed ID: 29792182
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten.
    Nair SS; Luu PL; Qu W; Maddugoda M; Huschtscha L; Reddel R; Chenevix-Trench G; Toso M; Kench JG; Horvath LG; Hayes VM; Stricker PD; Hughes TP; White DL; Rasko JEJ; Wong JJ; Clark SJ
    Epigenetics Chromatin; 2018 May; 11(1):24. PubMed ID: 29807544
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-Wide Analysis of DNA Methylation in Hematopoietic Cells: DNA Methylation Analysis by WGBS.
    Jeong M; Guzman AG; Goodell MA
    Methods Mol Biol; 2017; 1633():137-149. PubMed ID: 28735485
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
    Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DNA methylation estimation using methylation-sensitive restriction enzyme bisulfite sequencing (MREBS).
    Bonora G; Rubbi L; Morselli M; Ma F; Chronis C; Plath K; Pellegrini M
    PLoS One; 2019; 14(4):e0214368. PubMed ID: 30946758
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.
    Kunde-Ramamoorthy G; Coarfa C; Laritsky E; Kessler NJ; Harris RA; Xu M; Chen R; Shen L; Milosavljevic A; Waterland RA
    Nucleic Acids Res; 2014 Apr; 42(6):e43. PubMed ID: 24391148
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comprehensive benchmarking of software for mapping whole genome bisulfite data: from read alignment to DNA methylation analysis.
    Nunn A; Otto C; Stadler PF; Langenberger D
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33624017
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comparison of existing global DNA methylation assays to low-coverage whole-genome bisulfite sequencing for epidemiological studies.
    Crary-Dooley FK; Tam ME; Dunaway KW; Hertz-Picciotto I; Schmidt RJ; LaSalle JM
    Epigenetics; 2017 Mar; 12(3):206-214. PubMed ID: 28055307
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.
    Shahryary Y; Hazarika RR; Johannes F
    BMC Genomics; 2020 Jul; 21(1):479. PubMed ID: 32660416
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The SEQC2 epigenomics quality control (EpiQC) study.
    Foox J; Nordlund J; Lalancette C; Gong T; Lacey M; Lent S; Langhorst BW; Ponnaluri VKC; Williams L; Padmanabhan KR; Cavalcante R; Lundmark A; Butler D; Mozsary C; Gurvitch J; Greally JM; Suzuki M; Menor M; Nasu M; Alonso A; Sheridan C; Scherer A; Bruinsma S; Golda G; Muszynska A; Łabaj PP; Campbell MA; Wos F; Raine A; Liljedahl U; Axelsson T; Wang C; Chen Z; Yang Z; Li J; Yang X; Wang H; Melnick A; Guo S; Blume A; Franke V; Ibanez de Caceres I; Rodriguez-Antolin C; Rosas R; Davis JW; Ishii J; Megherbi DB; Xiao W; Liao W; Xu J; Hong H; Ning B; Tong W; Akalin A; Wang Y; Deng Y; Mason CE
    Genome Biol; 2021 Dec; 22(1):332. PubMed ID: 34872606
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data.
    Wang T; Guan W; Lin J; Boutaoui N; Canino G; Luo J; Celedón JC; Chen W
    Epigenetics; 2015; 10(7):662-9. PubMed ID: 26036609
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.