373 related articles for article (PubMed ID: 26628586)
1. LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines.
Seyres D; Darbo E; Perrin L; Herrmann C; González A
Bioinformatics; 2016 Apr; 32(7):1091-3. PubMed ID: 26628586
[TBL] [Abstract][Full Text] [Related]
2. Pathview: an R/Bioconductor package for pathway-based data integration and visualization.
Luo W; Brouwer C
Bioinformatics; 2013 Jul; 29(14):1830-1. PubMed ID: 23740750
[TBL] [Abstract][Full Text] [Related]
3. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
[TBL] [Abstract][Full Text] [Related]
4. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
Yu G; Wang LG; He QY
Bioinformatics; 2015 Jul; 31(14):2382-3. PubMed ID: 25765347
[TBL] [Abstract][Full Text] [Related]
5. lpNet: a linear programming approach to reconstruct signal transduction networks.
Matos MR; Knapp B; Kaderali L
Bioinformatics; 2015 Oct; 31(19):3231-3. PubMed ID: 26026168
[TBL] [Abstract][Full Text] [Related]
6. Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Gu Z; Eils R; Schlesner M
Bioinformatics; 2016 Sep; 32(18):2847-9. PubMed ID: 27207943
[TBL] [Abstract][Full Text] [Related]
7. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
Gendoo DM; Ratanasirigulchai N; Schröder MS; Paré L; Parker JS; Prat A; Haibe-Kains B
Bioinformatics; 2016 Apr; 32(7):1097-9. PubMed ID: 26607490
[TBL] [Abstract][Full Text] [Related]
8. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
[TBL] [Abstract][Full Text] [Related]
9. HilbertCurve: an R/Bioconductor package for high-resolution visualization of genomic data.
Gu Z; Eils R; Schlesner M
Bioinformatics; 2016 Aug; 32(15):2372-4. PubMed ID: 27153599
[TBL] [Abstract][Full Text] [Related]
10. PrInCE: an R/Bioconductor package for protein-protein interaction network inference from co-fractionation mass spectrometry data.
Skinnider MA; Cai C; Stacey RG; Foster LJ
Bioinformatics; 2021 Sep; 37(17):2775-2777. PubMed ID: 33471077
[TBL] [Abstract][Full Text] [Related]
11. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
[TBL] [Abstract][Full Text] [Related]
12. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
Sakellariou A; Spyrou G
BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
[TBL] [Abstract][Full Text] [Related]
13. PanViz: interactive visualization of the structure of functionally annotated pangenomes.
Pedersen TL; Nookaew I; Wayne Ussery D; Månsson M
Bioinformatics; 2017 Apr; 33(7):1081-1082. PubMed ID: 28057677
[TBL] [Abstract][Full Text] [Related]
14. VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants.
Obenchain V; Lawrence M; Carey V; Gogarten S; Shannon P; Morgan M
Bioinformatics; 2014 Jul; 30(14):2076-8. PubMed ID: 24681907
[TBL] [Abstract][Full Text] [Related]
15. Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
Hon J; Martínek T; Rajdl K; Lexa M
Bioinformatics; 2013 Aug; 29(15):1900-1. PubMed ID: 23709494
[TBL] [Abstract][Full Text] [Related]
16. TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets.
Puente-Santamaria L; Wasserman WW; Del Peso L
Bioinformatics; 2019 Dec; 35(24):5339-5340. PubMed ID: 31347689
[TBL] [Abstract][Full Text] [Related]
17. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
Chiesa M; Colombo GI; Piacentini L
Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
[TBL] [Abstract][Full Text] [Related]
18. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
Fournier F; Joly Beauparlant C; Paradis R; Droit A
Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
[TBL] [Abstract][Full Text] [Related]
19. MOCCA: a flexible suite for modelling DNA sequence motif occurrence combinatorics.
Bredesen BA; Rehmsmeier M
BMC Bioinformatics; 2021 May; 22(1):234. PubMed ID: 33962556
[TBL] [Abstract][Full Text] [Related]
20. A multi-objective genetic algorithm to find active modules in multiplex biological networks.
Novoa-Del-Toro EM; Mezura-Montes E; Vignes M; Térézol M; Magdinier F; Tichit L; Baudot A
PLoS Comput Biol; 2021 Aug; 17(8):e1009263. PubMed ID: 34460810
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
