These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes. Colman DR; Jay ZJ; Inskeep WP; Jennings Rd; Maas KR; Rusch DB; Takacs-Vesbach CD Front Microbiol; 2016; 7():304. PubMed ID: 27014227 [TBL] [Abstract][Full Text] [Related]
4. Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets. Yue Y; Huang H; Qi Z; Dou HM; Liu XY; Han TF; Chen Y; Song XJ; Zhang YH; Tu J BMC Bioinformatics; 2020 Jul; 21(1):334. PubMed ID: 32723290 [TBL] [Abstract][Full Text] [Related]
5. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes. Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281 [TBL] [Abstract][Full Text] [Related]
6. Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem. Swingley WD; Meyer-Dombard DR; Shock EL; Alsop EB; Falenski HD; Havig JR; Raymond J PLoS One; 2012; 7(6):e38108. PubMed ID: 22675512 [TBL] [Abstract][Full Text] [Related]
7. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Eloe-Fadrosh EA; Paez-Espino D; Jarett J; Dunfield PF; Hedlund BP; Dekas AE; Grasby SE; Brady AL; Dong H; Briggs BR; Li WJ; Goudeau D; Malmstrom R; Pati A; Pett-Ridge J; Rubin EM; Woyke T; Kyrpides NC; Ivanova NN Nat Commun; 2016 Jan; 7():10476. PubMed ID: 26814032 [TBL] [Abstract][Full Text] [Related]
8. Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes. White RA; Bottos EM; Roy Chowdhury T; Zucker JD; Brislawn CJ; Nicora CD; Fansler SJ; Glaesemann KR; Glass K; Jansson JK mSystems; 2016; 1(3):. PubMed ID: 27822530 [TBL] [Abstract][Full Text] [Related]
9. Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures. Pride DT; Schoenfeld T BMC Genomics; 2008 Sep; 9():420. PubMed ID: 18798991 [TBL] [Abstract][Full Text] [Related]
10. Ecological Dichotomies Arise in Microbial Communities Due to Mixing of Deep Hydrothermal Waters and Atmospheric Gas in a Circumneutral Hot Spring. Fernandes-Martins MC; Keller LM; Munro-Ehrlich M; Zimlich KR; Mettler MK; England AM; Clare R; Surya K; Shock EL; Colman DR; Boyd ES Appl Environ Microbiol; 2021 Nov; 87(23):e0159821. PubMed ID: 34586901 [TBL] [Abstract][Full Text] [Related]
11. Microbial community analysis of pH 4 thermal springs in Yellowstone National Park. Jiang X; Takacs-Vesbach CD Extremophiles; 2017 Jan; 21(1):135-152. PubMed ID: 27807621 [TBL] [Abstract][Full Text] [Related]
12. The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. Thiel V; Hügler M; Ward DM; Bryant DA Front Microbiol; 2017; 8():943. PubMed ID: 28634470 [TBL] [Abstract][Full Text] [Related]
14. Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park. Boyd ES; Jackson RA; Encarnacion G; Zahn JA; Beard T; Leavitt WD; Pi Y; Zhang CL; Pearson A; Geesey GG Appl Environ Microbiol; 2007 Oct; 73(20):6669-77. PubMed ID: 17720836 [TBL] [Abstract][Full Text] [Related]
15. Genomic and metagenomic insights into the microbial community of a thermal spring. Pedron R; Esposito A; Bianconi I; Pasolli E; Tett A; Asnicar F; Cristofolini M; Segata N; Jousson O Microbiome; 2019 Jan; 7(1):8. PubMed ID: 30674352 [TBL] [Abstract][Full Text] [Related]
16. Metabolic characteristics of dominant microbes and key rare species from an acidic hot spring in Taiwan revealed by metagenomics. Lin KH; Liao BY; Chang HW; Huang SW; Chang TY; Yang CY; Wang YB; Lin YT; Wu YW; Tang SL; Yu HT BMC Genomics; 2015 Dec; 16():1029. PubMed ID: 26630941 [TBL] [Abstract][Full Text] [Related]
18. Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. Becraft ED; Dodsworth JA; Murugapiran SK; Thomas SC; Ohlsson JI; Stepanauskas R; Hedlund BP; Swingley WD Front Microbiol; 2017; 8():2082. PubMed ID: 29163388 [TBL] [Abstract][Full Text] [Related]
19. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes. Lin HH; Liao YC Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514 [TBL] [Abstract][Full Text] [Related]
20. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects. Wang Y; Hu H; Li X OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]