BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

472 related articles for article (PubMed ID: 26680746)

  • 1. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
    Lee JH; Park SJ; Kenta N
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.
    Tsuji J; Weng Z
    Brief Bioinform; 2016 Nov; 17(6):938-952. PubMed ID: 26628557
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BCREval: a computational method to estimate the bisulfite conversion ratio in WGBS.
    Zhou J; Zhao M; Sun Z; Wu F; Liu Y; Liu X; He Z; He Q; He Q
    BMC Bioinformatics; 2020 Jan; 21(1):38. PubMed ID: 32005131
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Software updates in the Illumina HiSeq platform affect whole-genome bisulfite sequencing.
    Toh H; Shirane K; Miura F; Kubo N; Ichiyanagi K; Hayashi K; Saitou M; Suyama M; Ito T; Sasaki H
    BMC Genomics; 2017 Jan; 18(1):31. PubMed ID: 28056787
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Resolution of the DNA methylation state of single CpG dyads using in silico strand annealing and WGBS data.
    Xu C; Corces VG
    Nat Protoc; 2019 Jan; 14(1):202-216. PubMed ID: 30542058
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
    Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
    BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants.
    Grehl C; Wagner M; Lemnian I; Glaser B; Grosse I
    Front Plant Sci; 2020; 11():176. PubMed ID: 32256504
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.
    Kunde-Ramamoorthy G; Coarfa C; Laritsky E; Kessler NJ; Harris RA; Xu M; Chen R; Shen L; Milosavljevic A; Waterland RA
    Nucleic Acids Res; 2014 Apr; 42(6):e43. PubMed ID: 24391148
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes.
    Gatzmann F; Lyko F
    Methods Mol Biol; 2019; 1858():141-156. PubMed ID: 30414116
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq.
    Xing X; Zhang B; Li D; Wang T
    Methods Mol Biol; 2018; 1708():209-246. PubMed ID: 29224147
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues.
    Zou LS; Erdos MR; Taylor DL; Chines PS; Varshney A; ; Parker SCJ; Collins FS; Didion JP
    BMC Genomics; 2018 May; 19(1):390. PubMed ID: 29792182
    [TBL] [Abstract][Full Text] [Related]  

  • 13. WALT: fast and accurate read mapping for bisulfite sequencing.
    Chen H; Smith AD; Chen T
    Bioinformatics; 2016 Nov; 32(22):3507-3509. PubMed ID: 27466624
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Whole-Genome Bisulfite Sequencing Using the OvationĀ® Ultralow Methyl-Seq Protocol.
    Daviaud C; Renault V; Mauger F; Deleuze JF; Tost J
    Methods Mol Biol; 2018; 1708():83-104. PubMed ID: 29224140
    [TBL] [Abstract][Full Text] [Related]  

  • 15. BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
    Huang KYY; Huang YJ; Chen PY
    BMC Bioinformatics; 2018 Apr; 19(1):111. PubMed ID: 29614954
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten.
    Nair SS; Luu PL; Qu W; Maddugoda M; Huschtscha L; Reddel R; Chenevix-Trench G; Toso M; Kench JG; Horvath LG; Hayes VM; Stricker PD; Hughes TP; White DL; Rasko JEJ; Wong JJ; Clark SJ
    Epigenetics Chromatin; 2018 May; 11(1):24. PubMed ID: 29807544
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing.
    Zhou L; Ng HK; Drautz-Moses DI; Schuster SC; Beck S; Kim C; Chambers JC; Loh M
    Sci Rep; 2019 Jul; 9(1):10383. PubMed ID: 31316107
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-Wide Analysis of DNA Methylation in Hematopoietic Cells: DNA Methylation Analysis by WGBS.
    Jeong M; Guzman AG; Goodell MA
    Methods Mol Biol; 2017; 1633():137-149. PubMed ID: 28735485
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
    Chen J; Lutsik P; Akulenko R; Walter J; Helms V
    J Bioinform Comput Biol; 2014 Dec; 12(6):1442005. PubMed ID: 25553811
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Detection of differentially methylated regions from bisulfite-seq data by hidden Markov models incorporating genome-wide methylation level distributions.
    Saito Y; Mituyama T
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S3. PubMed ID: 26681544
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 24.