These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

290 related articles for article (PubMed ID: 26685306)

  • 1. PaxtoolsR: pathway analysis in R using Pathway Commons.
    Luna A; Babur Ö; Aksoy BA; Demir E; Sander C
    Bioinformatics; 2016 Apr; 32(8):1262-4. PubMed ID: 26685306
    [TBL] [Abstract][Full Text] [Related]  

  • 2. rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R.
    Luna A; Rajapakse VN; Sousa FG; Gao J; Schultz N; Varma S; Reinhold W; Sander C; Pommier Y
    Bioinformatics; 2016 Apr; 32(8):1272-4. PubMed ID: 26635141
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using biological pathway data with paxtools.
    Demir E; Babur O; Rodchenkov I; Aksoy BA; Fukuda KI; Gross B; Sümer OS; Bader GD; Sander C
    PLoS Comput Biol; 2013; 9(9):e1003194. PubMed ID: 24068901
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ndexr-an R package to interface with the network data exchange.
    Auer F; Hammoud Z; Ishkin A; Pratt D; Ideker T; Kramer F
    Bioinformatics; 2018 Feb; 34(4):716-717. PubMed ID: 29087446
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BioRuby: bioinformatics software for the Ruby programming language.
    Goto N; Prins P; Nakao M; Bonnal R; Aerts J; Katayama T
    Bioinformatics; 2010 Oct; 26(20):2617-9. PubMed ID: 20739307
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NetBioV: an R package for visualizing large network data in biology and medicine.
    Tripathi S; Dehmer M; Emmert-Streib F
    Bioinformatics; 2014 Oct; 30(19):2834-6. PubMed ID: 24928209
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis.
    Yu G; Wang LG; Yan GR; He QY
    Bioinformatics; 2015 Feb; 31(4):608-9. PubMed ID: 25677125
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
    Bonnal RJ; Aerts J; Githinji G; Goto N; MacLean D; Miller CA; Mishima H; Pagani M; Ramirez-Gonzalez R; Smant G; Strozzi F; Syme R; Vos R; Wennblom TJ; Woodcroft BJ; Katayama T; Prins P
    Bioinformatics; 2012 Apr; 28(7):1035-7. PubMed ID: 22332238
    [TBL] [Abstract][Full Text] [Related]  

  • 9. rBiopaxParser--an R package to parse, modify and visualize BioPAX data.
    Kramer F; Bayerlová M; Klemm F; Bleckmann A; Beissbarth T
    Bioinformatics; 2013 Feb; 29(4):520-2. PubMed ID: 23274212
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ChiBE: interactive visualization and manipulation of BioPAX pathway models.
    Babur O; Dogrusoz U; Demir E; Sander C
    Bioinformatics; 2010 Feb; 26(3):429-31. PubMed ID: 20007251
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs).
    Luna A; Sunshine ML; van Iersel MP; Aladjem MI; Kohn KW
    Bioinformatics; 2011 Aug; 27(15):2165-6. PubMed ID: 21636591
    [TBL] [Abstract][Full Text] [Related]  

  • 12. cPath: open source software for collecting, storing, and querying biological pathways.
    Cerami EG; Bader GD; Gross BE; Sander C
    BMC Bioinformatics; 2006 Nov; 7():497. PubMed ID: 17101041
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 14. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
    González-Beltrán A; Neumann S; Maguire E; Sansone SA; Rocca-Serra P
    BMC Bioinformatics; 2014; 15 Suppl 1(Suppl 1):S11. PubMed ID: 24564732
    [TBL] [Abstract][Full Text] [Related]  

  • 16. R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips.
    Ritchie ME; Carvalho BS; Hetrick KN; Tavaré S; Irizarry RA
    Bioinformatics; 2009 Oct; 25(19):2621-3. PubMed ID: 19661241
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BioNetGen 2.2: advances in rule-based modeling.
    Harris LA; Hogg JS; Tapia JJ; Sekar JA; Gupta S; Korsunsky I; Arora A; Barua D; Sheehan RP; Faeder JR
    Bioinformatics; 2016 Nov; 32(21):3366-3368. PubMed ID: 27402907
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks.
    Zinovyev A; Viara E; Calzone L; Barillot E
    Bioinformatics; 2008 Mar; 24(6):876-7. PubMed ID: 18024474
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rintact: enabling computational analysis of molecular interaction data from the IntAct repository.
    Chiang T; Li N; Orchard S; Kerrien S; Hermjakob H; Gentleman R; Huber W
    Bioinformatics; 2008 Apr; 24(8):1100-1. PubMed ID: 17989096
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.