BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 26704597)

  • 1. Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
    Sundfeld D; Havgaard JH; de Melo AC; Gorodkin J
    Bioinformatics; 2016 Apr; 32(8):1238-40. PubMed ID: 26704597
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%.
    Havgaard JH; Lyngsø RB; Stormo GD; Gorodkin J
    Bioinformatics; 2005 May; 21(9):1815-24. PubMed ID: 15657094
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiple structural alignment and clustering of RNA sequences.
    Torarinsson E; Havgaard JH; Gorodkin J
    Bioinformatics; 2007 Apr; 23(8):926-32. PubMed ID: 17324941
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RILogo: visualizing RNA-RNA interactions.
    Menzel P; Seemann SE; Gorodkin J
    Bioinformatics; 2012 Oct; 28(19):2523-6. PubMed ID: 22826541
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score.
    Hamada M; Sato K; Kiryu H; Mituyama T; Asai K
    Bioinformatics; 2009 Dec; 25(24):3236-43. PubMed ID: 19808876
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.
    Miladi M; Junge A; Costa F; Seemann SE; Havgaard JH; Gorodkin J; Backofen R
    Bioinformatics; 2017 Jul; 33(14):2089-2096. PubMed ID: 28334186
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural RNA alignment by multi-objective optimization.
    Schnattinger T; Schöning U; Kestler HA
    Bioinformatics; 2013 Jul; 29(13):1607-13. PubMed ID: 23620356
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA structure alignment by a unit-vector approach.
    Capriotti E; Marti-Renom MA
    Bioinformatics; 2008 Aug; 24(16):i112-8. PubMed ID: 18689811
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix.
    Havgaard JH; Torarinsson E; Gorodkin J
    PLoS Comput Biol; 2007 Oct; 3(10):1896-908. PubMed ID: 17937495
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Web-Beagle: a web server for the alignment of RNA secondary structures.
    Mattei E; Pietrosanto M; Ferrè F; Helmer-Citterich M
    Nucleic Acids Res; 2015 Jul; 43(W1):W493-7. PubMed ID: 25977293
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SARA-Coffee web server, a tool for the computation of RNA sequence and structure multiple alignments.
    Di Tommaso P; Bussotti G; Kemena C; Capriotti E; Chatzou M; Prieto P; Notredame C
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W356-60. PubMed ID: 24972831
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments.
    Tabei Y; Tsuda K; Kin T; Asai K
    Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634
    [TBL] [Abstract][Full Text] [Related]  

  • 14. R3D Align: global pairwise alignment of RNA 3D structures using local superpositions.
    Rahrig RR; Leontis NB; Zirbel CL
    Bioinformatics; 2010 Nov; 26(21):2689-97. PubMed ID: 20929913
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CMV: visualization for RNA and protein family models and their comparisons.
    Eggenhofer F; Hofacker IL; Backofen R; Höner Zu Siederdissen C
    Bioinformatics; 2018 Aug; 34(15):2676-2678. PubMed ID: 29554223
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
    Kemena C; Bussotti G; Capriotti E; Marti-Renom MA; Notredame C
    Bioinformatics; 2013 May; 29(9):1112-9. PubMed ID: 23449094
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNASAlign: RNA structural alignment system.
    Wong TK; Wan KL; Hsu BY; Cheung BW; Hon WK; Lam TW; Yiu SM
    Bioinformatics; 2011 Aug; 27(15):2151-2. PubMed ID: 21659321
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Alignment of RNA base pairing probability matrices.
    Hofacker IL; Bernhart SH; Stadler PF
    Bioinformatics; 2004 Sep; 20(14):2222-7. PubMed ID: 15073017
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.