111 related articles for article (PubMed ID: 26704599)
1. MCAST: scanning for cis-regulatory motif clusters.
Grant CE; Johnson J; Bailey TL; Noble WS
Bioinformatics; 2016 Apr; 32(8):1217-9. PubMed ID: 26704599
[TBL] [Abstract][Full Text] [Related]
2. Searching for statistically significant regulatory modules.
Bailey TL; Noble WS
Bioinformatics; 2003 Oct; 19 Suppl 2():ii16-25. PubMed ID: 14534166
[TBL] [Abstract][Full Text] [Related]
3. Epigenetic priors for identifying active transcription factor binding sites.
Cuellar-Partida G; Buske FA; McLeay RC; Whitington T; Noble WS; Bailey TL
Bioinformatics; 2012 Jan; 28(1):56-62. PubMed ID: 22072382
[TBL] [Abstract][Full Text] [Related]
4. De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets.
Niu M; Tabari ES; Su Z
BMC Genomics; 2014 Dec; 15():1047. PubMed ID: 25442502
[TBL] [Abstract][Full Text] [Related]
5. MEME SUITE: tools for motif discovery and searching.
Bailey TL; Boden M; Buske FA; Frith M; Grant CE; Clementi L; Ren J; Li WW; Noble WS
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W202-8. PubMed ID: 19458158
[TBL] [Abstract][Full Text] [Related]
6. An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.
Ma Q; Liu B; Zhou C; Yin Y; Li G; Xu Y
Bioinformatics; 2013 Sep; 29(18):2261-8. PubMed ID: 23846744
[TBL] [Abstract][Full Text] [Related]
7. Computational detection of cis -regulatory modules.
Aerts S; Van Loo P; Thijs G; Moreau Y; De Moor B
Bioinformatics; 2003 Oct; 19 Suppl 2():ii5-14. PubMed ID: 14534164
[TBL] [Abstract][Full Text] [Related]
8. A novel method for predicting activity of cis-regulatory modules, based on a diverse training set.
Yang W; Sinha S
Bioinformatics; 2017 Jan; 33(1):1-7. PubMed ID: 27609510
[TBL] [Abstract][Full Text] [Related]
9. Inferring direct DNA binding from ChIP-seq.
Bailey TL; Machanick P
Nucleic Acids Res; 2012 Sep; 40(17):e128. PubMed ID: 22610855
[TBL] [Abstract][Full Text] [Related]
10. INSECT: IN-silico SEarch for Co-occurring Transcription factors.
Rohr CO; Parra RG; Yankilevich P; Perez-Castro C
Bioinformatics; 2013 Nov; 29(22):2852-8. PubMed ID: 24008418
[TBL] [Abstract][Full Text] [Related]
11. Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.
Kazemian M; Zhu Q; Halfon MS; Sinha S
Nucleic Acids Res; 2011 Dec; 39(22):9463-72. PubMed ID: 21821659
[TBL] [Abstract][Full Text] [Related]
12. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
Pierstorff N; Bergman CM; Wiehe T
Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
[TBL] [Abstract][Full Text] [Related]
13. A New Algorithm for Identifying Cis-Regulatory Modules Based on Hidden Markov Model.
Guo H; Huo H
Biomed Res Int; 2017; 2017():6274513. PubMed ID: 28497059
[TBL] [Abstract][Full Text] [Related]
14. FIMO: scanning for occurrences of a given motif.
Grant CE; Bailey TL; Noble WS
Bioinformatics; 2011 Apr; 27(7):1017-8. PubMed ID: 21330290
[TBL] [Abstract][Full Text] [Related]
15. DISCOVER: a feature-based discriminative method for motif search in complex genomes.
Fu W; Ray P; Xing EP
Bioinformatics; 2009 Jun; 25(12):i321-9. PubMed ID: 19478006
[TBL] [Abstract][Full Text] [Related]
16. Using hexamers to predict cis-regulatory motifs in Drosophila.
Chan BY; Kibler D
BMC Bioinformatics; 2005 Oct; 6():262. PubMed ID: 16253142
[TBL] [Abstract][Full Text] [Related]
17. Stubb: a program for discovery and analysis of cis-regulatory modules.
Sinha S; Liang Y; Siggia E
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W555-9. PubMed ID: 16845069
[TBL] [Abstract][Full Text] [Related]
18. MOPAT: a graph-based method to predict recurrent cis-regulatory modules from known motifs.
Hu J; Hu H; Li X
Nucleic Acids Res; 2008 Aug; 36(13):4488-97. PubMed ID: 18606616
[TBL] [Abstract][Full Text] [Related]
19. Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.
Girgis HZ; Ovcharenko I
BMC Bioinformatics; 2012 Feb; 13():25. PubMed ID: 22313678
[TBL] [Abstract][Full Text] [Related]
20. STREME: accurate and versatile sequence motif discovery.
Bailey TL
Bioinformatics; 2021 Sep; 37(18):2834-2840. PubMed ID: 33760053
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]