These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

236 related articles for article (PubMed ID: 26732380)

  • 1. Efficient and automated large-scale detection of structural relationships in proteins with a flexible aligner.
    Gutiérrez FI; Rodriguez-Valenzuela F; Ibarra IL; Devos DP; Melo F
    BMC Bioinformatics; 2016 Jan; 17():20. PubMed ID: 26732380
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
    Wang J; Feng JA
    Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A 3D sequence-independent representation of the protein data bank.
    Fischer D; Tsai CJ; Nussinov R; Wolfson H
    Protein Eng; 1995 Oct; 8(10):981-97. PubMed ID: 8771179
    [TBL] [Abstract][Full Text] [Related]  

  • 4. YAKUSA: a fast structural database scanning method.
    Carpentier M; Brouillet S; Pothier J
    Proteins; 2005 Oct; 61(1):137-51. PubMed ID: 16049912
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
    Melvin I; Ie E; Kuang R; Weston J; Stafford WN; Leslie C
    BMC Bioinformatics; 2007 May; 8 Suppl 4(Suppl 4):S2. PubMed ID: 17570145
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
    Topham CM; Rouquier M; Tarrat N; André I
    Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PSSARD (2.0): a database server for making flexible queries relating amino acid sequences to main-chain secondary structure conformations for proteins of known three-dimensional structure and certain useful applications.
    Sridhar S; Babu AV; Guruprasad K
    Int J Biol Macromol; 2007 Jun; 41(1):109-13. PubMed ID: 17150250
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein structural similarity search by Ramachandran codes.
    Lo WC; Huang PJ; Chang CH; Lyu PC
    BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural alignment of protein descriptors - a combinatorial model.
    Antczak M; Kasprzak M; Lukasiak P; Blazewicz J
    BMC Bioinformatics; 2016 Sep; 17():383. PubMed ID: 27639380
    [TBL] [Abstract][Full Text] [Related]  

  • 10. NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment.
    Fotoohifiroozabadi S; Mohamad MS; Deris S
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):934-943. PubMed ID: 28534783
    [TBL] [Abstract][Full Text] [Related]  

  • 11. mTM-align: a server for fast protein structure database search and multiple protein structure alignment.
    Dong R; Pan S; Peng Z; Zhang Y; Yang J
    Nucleic Acids Res; 2018 Jul; 46(W1):W380-W386. PubMed ID: 29788129
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Using Variable-Length Aligned Fragment Pairs and an Improved Transition Function for Flexible Protein Structure Alignment.
    Cao H; Lu Y
    J Comput Biol; 2017 Jan; 24(1):2-12. PubMed ID: 27710035
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein structure mining using a structural alphabet.
    Tyagi M; de Brevern AG; Srinivasan N; Offmann B
    Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The LabelHash algorithm for substructure matching.
    Moll M; Bryant DH; Kavraki LE
    BMC Bioinformatics; 2010 Nov; 11():555. PubMed ID: 21070651
    [TBL] [Abstract][Full Text] [Related]  

  • 16. 3-D lookup: fast protein structure database searches at 90% reliability.
    Holm L; Sander C
    Proc Int Conf Intell Syst Mol Biol; 1995; 3():179-87. PubMed ID: 7584435
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS; Lackner P; Andreeva A; Sippl MJ
    J Mol Biol; 2000 Apr; 297(4):1003-13. PubMed ID: 10736233
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An alternative view of protein fold space.
    Shindyalov IN; Bourne PE
    Proteins; 2000 Feb; 38(3):247-60. PubMed ID: 10713986
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J; Wang JT; Hu J; Tian B
    BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS.
    Shi S; Zhong Y; Majumdar I; Sri Krishna S; Grishin NV
    Bioinformatics; 2007 Jun; 23(11):1331-8. PubMed ID: 17384423
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.