507 related articles for article (PubMed ID: 26743509)
1. MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
Hauser M; Steinegger M; Söding J
Bioinformatics; 2016 May; 32(9):1323-30. PubMed ID: 26743509
[TBL] [Abstract][Full Text] [Related]
2. kClust: fast and sensitive clustering of large protein sequence databases.
Hauser M; Mayer CE; Söding J
BMC Bioinformatics; 2013 Aug; 14():248. PubMed ID: 23945046
[TBL] [Abstract][Full Text] [Related]
3. Faster sequence homology searches by clustering subsequences.
Suzuki S; Kakuta M; Ishida T; Akiyama Y
Bioinformatics; 2015 Apr; 31(8):1183-90. PubMed ID: 25432166
[TBL] [Abstract][Full Text] [Related]
4. HH-suite3 for fast remote homology detection and deep protein annotation.
Steinegger M; Meier M; Mirdita M; Vöhringer H; Haunsberger SJ; Söding J
BMC Bioinformatics; 2019 Sep; 20(1):473. PubMed ID: 31521110
[TBL] [Abstract][Full Text] [Related]
5. Uniclust databases of clustered and deeply annotated protein sequences and alignments.
Mirdita M; von den Driesch L; Galiez C; Martin MJ; Söding J; Steinegger M
Nucleic Acids Res; 2017 Jan; 45(D1):D170-D176. PubMed ID: 27899574
[TBL] [Abstract][Full Text] [Related]
6. WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.
Galiez C; Siebert M; Enault F; Vincent J; Söding J
Bioinformatics; 2017 Oct; 33(19):3113-3114. PubMed ID: 28957499
[TBL] [Abstract][Full Text] [Related]
7. Search and clustering orders of magnitude faster than BLAST.
Edgar RC
Bioinformatics; 2010 Oct; 26(19):2460-1. PubMed ID: 20709691
[TBL] [Abstract][Full Text] [Related]
8. CLAST: CUDA implemented large-scale alignment search tool.
Yano M; Mori H; Akiyama Y; Yamada T; Kurokawa K
BMC Bioinformatics; 2014 Dec; 15(1):406. PubMed ID: 25495907
[TBL] [Abstract][Full Text] [Related]
9. VSEARCH: a versatile open source tool for metagenomics.
Rognes T; Flouri T; Nichols B; Quince C; Mahé F
PeerJ; 2016; 4():e2584. PubMed ID: 27781170
[TBL] [Abstract][Full Text] [Related]
10. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
Li W; Godzik A
Bioinformatics; 2006 Jul; 22(13):1658-9. PubMed ID: 16731699
[TBL] [Abstract][Full Text] [Related]
11. H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs.
Ye W; Chen Y; Zhang Y; Xu Y
Bioinformatics; 2017 Apr; 33(8):1130-1138. PubMed ID: 28087515
[TBL] [Abstract][Full Text] [Related]
12. UProC: tools for ultra-fast protein domain classification.
Meinicke P
Bioinformatics; 2015 May; 31(9):1382-8. PubMed ID: 25540185
[TBL] [Abstract][Full Text] [Related]
13. SANSparallel: interactive homology search against Uniprot.
Somervuo P; Holm L
Nucleic Acids Res; 2015 Jul; 43(W1):W24-9. PubMed ID: 25855811
[TBL] [Abstract][Full Text] [Related]
14. RAPSearch: a fast protein similarity search tool for short reads.
Ye Y; Choi JH; Tang H
BMC Bioinformatics; 2011 May; 12():159. PubMed ID: 21575167
[TBL] [Abstract][Full Text] [Related]
15. Large-scale machine learning for metagenomics sequence classification.
Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
[TBL] [Abstract][Full Text] [Related]
16. Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Krejci A; Hupp TR; Lexa M; Vojtesek B; Muller P
Bioinformatics; 2016 Jan; 32(1):9-16. PubMed ID: 26342231
[TBL] [Abstract][Full Text] [Related]
17. SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.
Wang C; Lefkowitz EJ
BMC Bioinformatics; 2004 Oct; 5():171. PubMed ID: 15511296
[TBL] [Abstract][Full Text] [Related]
18. LZW-Kernel: fast kernel utilizing variable length code blocks from LZW compressors for protein sequence classification.
Filatov G; Bauwens B; Kertész-Farkas A
Bioinformatics; 2018 Oct; 34(19):3281-3288. PubMed ID: 29741583
[TBL] [Abstract][Full Text] [Related]
19. High speed BLASTN: an accelerated MegaBLAST search tool.
Chen Y; Ye W; Zhang Y; Xu Y
Nucleic Acids Res; 2015 Sep; 43(16):7762-8. PubMed ID: 26250111
[TBL] [Abstract][Full Text] [Related]
20. Fast and sensitive taxonomic assignment to metagenomic contigs.
Mirdita M; Steinegger M; Breitwieser F; Söding J; Levy Karin E
Bioinformatics; 2021 Sep; 37(18):3029-3031. PubMed ID: 33734313
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
