BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

256 related articles for article (PubMed ID: 26760898)

  • 1. Fully Atomistic Simulations of Protein Unfolding in Low Speed Atomic Force Microscope and Force Clamp Experiments with the Help of Boxed Molecular Dynamics.
    Booth JJ; Shalashilin DV
    J Phys Chem B; 2016 Feb; 120(4):700-8. PubMed ID: 26760898
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Simulation of protein pulling dynamics on second time scale with boxed molecular dynamics.
    Mapplebeck S; Booth J; Shalashilin D
    J Chem Phys; 2021 Aug; 155(8):085101. PubMed ID: 34470356
    [TBL] [Abstract][Full Text] [Related]  

  • 3. How Fast Is Too Fast in Force-Probe Molecular Dynamics Simulations?
    Sheridan S; Gräter F; Daday C
    J Phys Chem B; 2019 May; 123(17):3658-3664. PubMed ID: 30970209
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-speed force spectroscopy unfolds titin at the velocity of molecular dynamics simulations.
    Rico F; Gonzalez L; Casuso I; Puig-Vidal M; Scheuring S
    Science; 2013 Nov; 342(6159):741-3. PubMed ID: 24202172
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Nanomechanics of β-rich proteins related to neuronal disorders studied by AFM, all-atom and coarse-grained MD methods.
    Mikulska K; Strzelecki J; Nowak W
    J Mol Model; 2014 Mar; 20(3):2144. PubMed ID: 24562857
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Direct Observation of the Reversible Two-State Unfolding and Refolding of an α/β Protein by Single-Molecule Atomic Force Microscopy.
    He C; Hu C; Hu X; Hu X; Xiao A; Perkins TT; Li H
    Angew Chem Int Ed Engl; 2015 Aug; 54(34):9921-5. PubMed ID: 26136291
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-Speed Force Spectroscopy for Single Protein Unfolding.
    Sumbul F; Marchesi A; Takahashi H; Scheuring S; Rico F
    Methods Mol Biol; 2018; 1814():243-264. PubMed ID: 29956237
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dynamic disorder can explain non-exponential kinetics of fast protein mechanical unfolding.
    Costescu BI; Sturm S; Gräter F
    J Struct Biol; 2017 Jan; 197(1):43-49. PubMed ID: 27771331
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computer simulations and theory of protein translocation.
    Makarov DE
    Acc Chem Res; 2009 Feb; 42(2):281-9. PubMed ID: 19072704
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Optimizing the calculation of energy landscape parameters from single-molecule protein unfolding experiments.
    Tych KM; Hughes ML; Bourke J; Taniguchi Y; Kawakami M; Brockwell DJ; Dougan L
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Jan; 91(1):012710. PubMed ID: 25679645
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mechanical Unfolding of Proteins-A Comparative Nonequilibrium Molecular Dynamics Study.
    Mykuliak VV; Sikora M; Booth JJ; Cieplak M; Shalashilin DV; Hytönen VP
    Biophys J; 2020 Sep; 119(5):939-949. PubMed ID: 32822586
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Recent applications of boxed molecular dynamics: a simple multiscale technique for atomistic simulations.
    Booth J; Vazquez S; Martinez-Nunez E; Marks A; Rodgers J; Glowacki DR; Shalashilin DV
    Philos Trans A Math Phys Eng Sci; 2014 Aug; 372(2021):. PubMed ID: 24982247
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Unbinding of the streptavidin-biotin complex by atomic force microscopy: a hybrid simulation study.
    Zhou J; Zhang L; Leng Y; Tsao HK; Sheng YJ; Jiang S
    J Chem Phys; 2006 Sep; 125(10):104905. PubMed ID: 16999548
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An improved strategy for generating forces in steered molecular dynamics: the mechanical unfolding of titin, e2lip3 and ubiquitin.
    Ho BK; Agard DA
    PLoS One; 2010 Sep; 5(9):. PubMed ID: 20927369
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Loading-device effects on the protein-unfolding mechanisms using molecular-dynamic simulations.
    Lee M; Choi H; Yoon G; Na S
    J Mol Graph Model; 2018 May; 81():162-167. PubMed ID: 29554493
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Forces and energetics of hapten-antibody dissociation: a biased molecular dynamics simulation study.
    Paci E; Caflisch A; Plückthun A; Karplus M
    J Mol Biol; 2001 Nov; 314(3):589-605. PubMed ID: 11846569
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Force-induced change in protein unfolding mechanism: discrete or continuous switch?
    Graham TG; Best RB
    J Phys Chem B; 2011 Feb; 115(6):1546-61. PubMed ID: 21271708
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein high-force pulling simulations yield low-force results.
    Lichter S; Rafferty B; Flohr Z; Martini A
    PLoS One; 2012; 7(4):e34781. PubMed ID: 22529933
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Experimental and computational characterization of biological liquid crystals: a review of single-molecule bioassays.
    Eom K; Yang J; Park J; Yoon G; Sohn YS; Park S; Yoon DS; Na S; Kwon T
    Int J Mol Sci; 2009 Sep; 10(9):4009-4032. PubMed ID: 19865530
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Mechanical unfolding of TNfn3: the unfolding pathway of a fnIII domain probed by protein engineering, AFM and MD simulation.
    Ng SP; Rounsevell RW; Steward A; Geierhaas CD; Williams PM; Paci E; Clarke J
    J Mol Biol; 2005 Jul; 350(4):776-89. PubMed ID: 15964016
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.