418 related articles for article (PubMed ID: 26763898)
1. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.
D'Amore R; Ijaz UZ; Schirmer M; Kenny JG; Gregory R; Darby AC; Shakya M; Podar M; Quince C; Hall N
BMC Genomics; 2016 Jan; 17():55. PubMed ID: 26763898
[TBL] [Abstract][Full Text] [Related]
2. A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.
de Muinck EJ; Trosvik P; Gilfillan GD; Hov JR; Sundaram AYM
Microbiome; 2017 Jul; 5(1):68. PubMed ID: 28683838
[TBL] [Abstract][Full Text] [Related]
3. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
4. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
5. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
7. Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies.
Thorsen J; Brejnrod A; Mortensen M; Rasmussen MA; Stokholm J; Al-Soud WA; Sørensen S; Bisgaard H; Waage J
Microbiome; 2016 Nov; 4(1):62. PubMed ID: 27884206
[TBL] [Abstract][Full Text] [Related]
8. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
9. Choice of 16S Ribosomal RNA Primers Impacts Male Urinary Microbiota Profiling.
Heidrich V; Inoue LT; Asprino PF; Bettoni F; Mariotti ACH; Bastos DA; Jardim DLF; Arap MA; Camargo AA
Front Cell Infect Microbiol; 2022; 12():862338. PubMed ID: 35531325
[TBL] [Abstract][Full Text] [Related]
10. rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing.
Ogier JC; Pagès S; Galan M; Barret M; Gaudriault S
BMC Microbiol; 2019 Jul; 19(1):171. PubMed ID: 31357928
[TBL] [Abstract][Full Text] [Related]
11. VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
Mori H; Maruyama T; Yano M; Yamada T; Kurokawa K
BMC Syst Biol; 2018 Mar; 12(Suppl 2):30. PubMed ID: 29560821
[TBL] [Abstract][Full Text] [Related]
12. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
Seol D; Lim JS; Sung S; Lee YH; Jeong M; Cho S; Kwak W; Kim H
Microbiol Spectr; 2022 Apr; 10(2):e0201721. PubMed ID: 35352997
[TBL] [Abstract][Full Text] [Related]
13. Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing.
Huber P; Cornejo-Castillo FM; Ferrera I; Sánchez P; Logares R; Metz S; Balagué V; Acinas SG; Gasol JM; Unrein F
Appl Environ Microbiol; 2019 Apr; 85(7):. PubMed ID: 30709827
[TBL] [Abstract][Full Text] [Related]
14. A 16S rRNA gene sequencing and analysis protocol for the Illumina MiniSeq platform.
Pichler M; Coskun ÖK; Ortega-Arbulú AS; Conci N; Wörheide G; Vargas S; Orsi WD
Microbiologyopen; 2018 Dec; 7(6):e00611. PubMed ID: 29575567
[TBL] [Abstract][Full Text] [Related]
15. Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome.
Salamon D; Zapała B; Krawczyk A; Potasiewicz A; Nikiforuk A; Stój A; Gosiewski T
Appl Microbiol Biotechnol; 2022 Nov; 106(22):7671-7681. PubMed ID: 36322250
[TBL] [Abstract][Full Text] [Related]
16. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
17. Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.
Shakya M; Quince C; Campbell JH; Yang ZK; Schadt CW; Podar M
Environ Microbiol; 2013 Jun; 15(6):1882-99. PubMed ID: 23387867
[TBL] [Abstract][Full Text] [Related]
18. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
19. Benchmarking second and third-generation sequencing platforms for microbial metagenomics.
Meslier V; Quinquis B; Da Silva K; Plaza Oñate F; Pons N; Roume H; Podar M; Almeida M
Sci Data; 2022 Nov; 9(1):694. PubMed ID: 36369227
[TBL] [Abstract][Full Text] [Related]
20. Targeted 16S rRNA Gene Capture by Hybridization and Bioinformatic Analysis.
Comtet-Marre S; Chakoory O; Peyret P
Methods Mol Biol; 2023; 2605():187-208. PubMed ID: 36520395
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
