These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
651 related articles for article (PubMed ID: 26772178)
1. svclassify: a method to establish benchmark structural variant calls. Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178 [TBL] [Abstract][Full Text] [Related]
2. Robust Benchmark Structural Variant Calls of An Asian Using State-of-the-art Long-read Sequencing Technologies. Du X; Li L; Liang F; Liu S; Zhang W; Sun S; Sun Y; Fan F; Wang L; Liang X; Qiu W; Fan G; Wang O; Yang W; Zhang J; Xiao Y; Wang Y; Wang D; Qu S; Chen F; Huang J Genomics Proteomics Bioinformatics; 2022 Feb; 20(1):192-204. PubMed ID: 33662625 [TBL] [Abstract][Full Text] [Related]
3. VISTA: an integrated framework for structural variant discovery. Sarwal V; Lee S; Yang J; Sankararaman S; Chaisson M; Eskin E; Mangul S Brief Bioinform; 2024 Jul; 25(5):. PubMed ID: 39297879 [TBL] [Abstract][Full Text] [Related]
4. A Comparison of Structural Variant Calling from Short-Read and Nanopore-Based Whole-Genome Sequencing Using Optical Genome Mapping as a Benchmark. Pei Y; Tanguy M; Giess A; Dixit A; Wilson LC; Gibbons RJ; Twigg SRF; Elgar G; Wilkie AOM Genes (Basel); 2024 Jul; 15(7):. PubMed ID: 39062704 [TBL] [Abstract][Full Text] [Related]
5. A robust benchmark for detection of germline large deletions and insertions. Zook JM; Hansen NF; Olson ND; Chapman L; Mullikin JC; Xiao C; Sherry S; Koren S; Phillippy AM; Boutros PC; Sahraeian SME; Huang V; Rouette A; Alexander N; Mason CE; Hajirasouliha I; Ricketts C; Lee J; Tearle R; Fiddes IT; Barrio AM; Wala J; Carroll A; Ghaffari N; Rodriguez OL; Bashir A; Jackman S; Farrell JJ; Wenger AM; Alkan C; Soylev A; Schatz MC; Garg S; Church G; Marschall T; Chen K; Fan X; English AC; Rosenfeld JA; Zhou W; Mills RE; Sage JM; Davis JR; Kaiser MD; Oliver JS; Catalano AP; Chaisson MJP; Spies N; Sedlazeck FJ; Salit M Nat Biotechnol; 2020 Nov; 38(11):1347-1355. PubMed ID: 32541955 [TBL] [Abstract][Full Text] [Related]
6. A large structural variant collection in Holstein cattle and associated database for variant discovery, characterization, and application. Grant JR; Herman EK; Barlow LD; Miglior F; Schenkel FS; Baes CF; Stothard P BMC Genomics; 2024 Sep; 25(1):903. PubMed ID: 39350025 [TBL] [Abstract][Full Text] [Related]
7. SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines. Leung WY; Marschall T; Paudel Y; Falquet L; Mei H; Schönhuth A; Maoz Moss TY BMC Genomics; 2015 Mar; 16(1):238. PubMed ID: 25887570 [TBL] [Abstract][Full Text] [Related]
8. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies. Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120 [TBL] [Abstract][Full Text] [Related]
9. A crowdsourced set of curated structural variants for the human genome. Chapman LM; Spies N; Pai P; Lim CS; Carroll A; Narzisi G; Watson CM; Proukakis C; Clarke WE; Nariai N; Dawson E; Jones G; Blankenberg D; Brueffer C; Xiao C; Kolora SRR; Alexander N; Wolujewicz P; Ahmed AE; Smith G; Shehreen S; Wenger AM; Salit M; Zook JM PLoS Comput Biol; 2020 Jun; 16(6):e1007933. PubMed ID: 32559231 [TBL] [Abstract][Full Text] [Related]
10. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement. Audano PA; Beck CR Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712 [TBL] [Abstract][Full Text] [Related]
11. Comparison and benchmark of structural variants detected from long read and long-read assembly. Lin J; Jia P; Wang S; Kosters W; Ye K Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087 [TBL] [Abstract][Full Text] [Related]
12. Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective. Eaaswarkhanth M; Pavlidis P; Gokcumen O Hum Biol; 2014; 86(4):260-75. PubMed ID: 25959693 [TBL] [Abstract][Full Text] [Related]
13. HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologies. Fan X; Chaisson M; Nakhleh L; Chen K Genome Res; 2017 May; 27(5):793-800. PubMed ID: 28104618 [TBL] [Abstract][Full Text] [Related]
14. RAPTR-SV: a hybrid method for the detection of structural variants. Bickhart DM; Hutchison JL; Xu L; Schnabel RD; Taylor JF; Reecy JM; Schroeder S; Van Tassell CP; Sonstegard TS; Liu GE Bioinformatics; 2015 Jul; 31(13):2084-90. PubMed ID: 25686638 [TBL] [Abstract][Full Text] [Related]
15. nanotatoR: a tool for enhanced annotation of genomic structural variants. Bhattacharya S; Barseghyan H; Délot EC; Vilain E BMC Genomics; 2021 Jan; 22(1):10. PubMed ID: 33407088 [TBL] [Abstract][Full Text] [Related]
16. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing. Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968 [TBL] [Abstract][Full Text] [Related]
17. Comparing the performance of selected variant callers using synthetic data and genome segmentation. Bian X; Zhu B; Wang M; Hu Y; Chen Q; Nguyen C; Hicks B; Meerzaman D BMC Bioinformatics; 2018 Nov; 19(1):429. PubMed ID: 30453880 [TBL] [Abstract][Full Text] [Related]
18. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology. Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050 [TBL] [Abstract][Full Text] [Related]
19. NPSV: A simulation-driven approach to genotyping structural variants in whole-genome sequencing data. Linderman MD; Paudyal C; Shakeel M; Kelley W; Bashir A; Gelb BD Gigascience; 2021 Jul; 10(7):. PubMed ID: 34195837 [TBL] [Abstract][Full Text] [Related]