BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

99 related articles for article (PubMed ID: 26772805)

  • 1. Deciphering transcriptional regulations coordinating the response to environmental changes.
    Acuña V; Aravena A; Guziolowski C; Eveillard D; Siegel A; Maass A
    BMC Bioinformatics; 2016 Jan; 17():35. PubMed ID: 26772805
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcriptional regulatory networks via gene ontology and expression data.
    Tuncay K; Ensman L; Sun J; Haidar AA; Stanley F; Trelinski M; Ortoleva P
    In Silico Biol; 2007; 7(1):21-34. PubMed ID: 17688426
    [TBL] [Abstract][Full Text] [Related]  

  • 3. An integrated approach to reconstructing genome-scale transcriptional regulatory networks.
    Imam S; Noguera DR; Donohue TJ
    PLoS Comput Biol; 2015 Feb; 11(2):e1004103. PubMed ID: 25723545
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Inferring the regulatory interaction models of transcription factors in transcriptional regulatory networks.
    Awad S; Panchy N; Ng SK; Chen J
    J Bioinform Comput Biol; 2012 Oct; 10(5):1250012. PubMed ID: 22849367
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Global transcriptional regulatory network for
    Fang X; Sastry A; Mih N; Kim D; Tan J; Yurkovich JT; Lloyd CJ; Gao Y; Yang L; Palsson BO
    Proc Natl Acad Sci U S A; 2017 Sep; 114(38):10286-10291. PubMed ID: 28874552
    [TBL] [Abstract][Full Text] [Related]  

  • 6. An integrative method to decode regulatory logics in gene transcription.
    Yan B; Guan D; Wang C; Wang J; He B; Qin J; Boheler KR; Lu A; Zhang G; Zhu H
    Nat Commun; 2017 Oct; 8(1):1044. PubMed ID: 29051499
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Analysis of the hierarchical structure of the B. subtilis transcriptional regulatory network.
    Kumar S; Vendruscolo M; Singh A; Kumar D; Samal A
    Mol Biosyst; 2015 Mar; 11(3):930-41. PubMed ID: 25599335
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Matrix formalism to describe functional states of transcriptional regulatory systems.
    Gianchandani EP; Papin JA; Price ND; Joyce AR; Palsson BO
    PLoS Comput Biol; 2006 Aug; 2(8):e101. PubMed ID: 16895435
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
    Hsu SD; Huang HY; Chou CH; Sun YM; Hsu MT; Tsou AP
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S12. PubMed ID: 25707768
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks.
    Yu B; Doraiswamy H; Chen X; Miraldi E; Arrieta-Ortiz ML; Hafemeister C; Madar A; Bonneau R; Silva CT
    IEEE Trans Vis Comput Graph; 2014 Dec; 20(12):1903-12. PubMed ID: 26356904
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Understanding transcriptional regulatory networks using computational models.
    He B; Tan K
    Curr Opin Genet Dev; 2016 Apr; 37():101-108. PubMed ID: 26950762
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach.
    Freyre-González JA; Alonso-Pavón JA; Treviño-Quintanilla LG; Collado-Vides J
    Genome Biol; 2008 Oct; 9(10):R154. PubMed ID: 18954463
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.
    Sengupta D; Bandyopadhyay S
    Mol Biosyst; 2011 Jun; 7(6):1966-73. PubMed ID: 21483898
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Switched Latent Force Models for Reverse-Engineering Transcriptional Regulation in Gene Expression Data.
    Lopez-Lopera AF; Alvarez MA
    IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(1):322-335. PubMed ID: 29990003
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.
    Varala K; Marshall-Colón A; Cirrone J; Brooks MD; Pasquino AV; Léran S; Mittal S; Rock TM; Edwards MB; Kim GJ; Ruffel S; McCombie WR; Shasha D; Coruzzi GM
    Proc Natl Acad Sci U S A; 2018 Jun; 115(25):6494-6499. PubMed ID: 29769331
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A Systems Biology Approach To Disentangle the Direct and Indirect Effects of Global Transcription Factors on Gene Expression in Escherichia coli.
    Iyer MS; Pal A; Venkatesh KV
    Microbiol Spectr; 2023 Feb; 11(2):e0210122. PubMed ID: 36749045
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
    Marr C; Theis FJ; Liebovitch LS; Hütt MT
    PLoS Comput Biol; 2010 Jul; 6(7):e1000836. PubMed ID: 20617198
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.
    Pearl JR; Colantuoni C; Bergey DE; Funk CC; Shannon P; Basu B; Casella AM; Oshone RT; Hood L; Price ND; Ament SA
    Cell Syst; 2019 Feb; 8(2):122-135.e7. PubMed ID: 30772379
    [TBL] [Abstract][Full Text] [Related]  

  • 19. TFforge utilizes large-scale binding site divergence to identify transcriptional regulators involved in phenotypic differences.
    Langer BE; Hiller M
    Nucleic Acids Res; 2019 Feb; 47(4):e19. PubMed ID: 30496469
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
    Kim SY; Kim Y
    BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.