1309 related articles for article (PubMed ID: 26774270)
1. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
[TBL] [Abstract][Full Text] [Related]
2. Quality control of microbiota metagenomics by k-mer analysis.
Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M
BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914
[TBL] [Abstract][Full Text] [Related]
3. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
[TBL] [Abstract][Full Text] [Related]
4. Comparison of k-mer-based
Ponsero AJ; Miller M; Hurwitz BL
Microbiome Res Rep; 2023; 2(4):27. PubMed ID: 38058765
[No Abstract] [Full Text] [Related]
5. MetaFast: fast reference-free graph-based comparison of shotgun metagenomic data.
Ulyantsev VI; Kazakov SV; Dubinkina VB; Tyakht AV; Alexeev DG
Bioinformatics; 2016 Sep; 32(18):2760-7. PubMed ID: 27259541
[TBL] [Abstract][Full Text] [Related]
6. An Expanded Gene Catalog of Mouse Gut Metagenomes.
Zhu J; Ren H; Zhong H; Li X; Zou Y; Han M; Li M; Madsen L; Kristiansen K; Xiao L
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627510
[TBL] [Abstract][Full Text] [Related]
7. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
8. Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes.
Kim CY; Lee M; Yang S; Kim K; Yong D; Kim HR; Lee I
Genome Med; 2021 Aug; 13(1):134. PubMed ID: 34446072
[TBL] [Abstract][Full Text] [Related]
9. Comparison of metagenomic samples using sequence signatures.
Jiang B; Song K; Ren J; Deng M; Sun F; Zhang X
BMC Genomics; 2012 Dec; 13():730. PubMed ID: 23268604
[TBL] [Abstract][Full Text] [Related]
10. DectICO: an alignment-free supervised metagenomic classification method based on feature extraction and dynamic selection.
Ding X; Cheng F; Cao C; Sun X
BMC Bioinformatics; 2015 Oct; 16():323. PubMed ID: 26446672
[TBL] [Abstract][Full Text] [Related]
11. Estimating the total genome length of a metagenomic sample using k-mers.
Hua K; Zhang X
BMC Genomics; 2019 Apr; 20(Suppl 2):183. PubMed ID: 30967110
[TBL] [Abstract][Full Text] [Related]
12. Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.
Lin HH; Liao YC
Sci Rep; 2016 Apr; 6():24175. PubMed ID: 27067514
[TBL] [Abstract][Full Text] [Related]
13. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
[TBL] [Abstract][Full Text] [Related]
14. Libra: scalable k-mer-based tool for massive all-vs-all metagenome comparisons.
Choi I; Ponsero AJ; Bomhoff M; Youens-Clark K; Hartman JH; Hurwitz BL
Gigascience; 2019 Feb; 8(2):. PubMed ID: 30597002
[TBL] [Abstract][Full Text] [Related]
15. Towards a unified medical microbiome ecology of the OMU for metagenomes and the OTU for microbes.
Ma ZS
BMC Bioinformatics; 2024 Mar; 25(1):137. PubMed ID: 38553666
[TBL] [Abstract][Full Text] [Related]
16. Using populations of human and microbial genomes for organism detection in metagenomes.
Ames SK; Gardner SN; Marti JM; Slezak TR; Gokhale MB; Allen JE
Genome Res; 2015 Jul; 25(7):1056-67. PubMed ID: 25926546
[TBL] [Abstract][Full Text] [Related]
17. Abundance profiling of specific gene groups using precomputed gut metagenomes yields novel biological hypotheses.
Yarygin K; Tyakht A; Larin A; Kostryukova E; Kolchenko S; Bitner V; Alexeev D
PLoS One; 2017; 12(4):e0176154. PubMed ID: 28448616
[TBL] [Abstract][Full Text] [Related]
18. Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly.
Ghosh TS; Mehra V; Mande SS
J Bioinform Comput Biol; 2015 Jun; 13(3):1541004. PubMed ID: 25790784
[TBL] [Abstract][Full Text] [Related]
19. Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.
Wang M; Doak TG; Ye Y
Genome Biol; 2015 Nov; 16():243. PubMed ID: 26527161
[TBL] [Abstract][Full Text] [Related]
20. Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.
Nayfach S; Bradley PH; Wyman SK; Laurent TJ; Williams A; Eisen JA; Pollard KS; Sharpton TJ
PLoS Comput Biol; 2015 Nov; 11(11):e1004573. PubMed ID: 26565399
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]