BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

364 related articles for article (PubMed ID: 26789840)

  • 1. Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
    Stapleton JA; Kim J; Hamilton JP; Wu M; Irber LC; Maddamsetti R; Briney B; Newton L; Burton DR; Brown CT; Chan C; Buell CR; Whitehead TA
    PLoS One; 2016; 11(1):e0147229. PubMed ID: 26789840
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome assembly using Nanopore-guided long and error-free DNA reads.
    Madoui MA; Engelen S; Cruaud C; Belser C; Bertrand L; Alberti A; Lemainque A; Wincker P; Aury JM
    BMC Genomics; 2015 Apr; 16(1):327. PubMed ID: 25927464
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Extraction of high-molecular-weight genomic DNA for long-read sequencing of single molecules.
    Mayjonade B; Gouzy J; Donnadieu C; Pouilly N; Marande W; Callot C; Langlade N; Muños S
    Biotechniques; 2016 Oct; 61(4):203-205. PubMed ID: 27712583
    [TBL] [Abstract][Full Text] [Related]  

  • 4. WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads.
    Patterson M; Marschall T; Pisanti N; van Iersel L; Stougie L; Klau GW; Schönhuth A
    J Comput Biol; 2015 Jun; 22(6):498-509. PubMed ID: 25658651
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
    Zheng GX; Lau BT; Schnall-Levin M; Jarosz M; Bell JM; Hindson CM; Kyriazopoulou-Panagiotopoulou S; Masquelier DA; Merrill L; Terry JM; Mudivarti PA; Wyatt PW; Bharadwaj R; Makarewicz AJ; Li Y; Belgrader P; Price AD; Lowe AJ; Marks P; Vurens GM; Hardenbol P; Montesclaros L; Luo M; Greenfield L; Wong A; Birch DE; Short SW; Bjornson KP; Patel P; Hopmans ES; Wood C; Kaur S; Lockwood GK; Stafford D; Delaney JP; Wu I; Ordonez HS; Grimes SM; Greer S; Lee JY; Belhocine K; Giorda KM; Heaton WH; McDermott GP; Bent ZW; Meschi F; Kondov NO; Wilson R; Bernate JA; Gauby S; Kindwall A; Bermejo C; Fehr AN; Chan A; Saxonov S; Ness KD; Hindson BJ; Ji HP
    Nat Biotechnol; 2016 Mar; 34(3):303-11. PubMed ID: 26829319
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
    Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
    Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
    Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
    Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
    Li Y; Lin Y
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
    Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
    Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A simple method for semi-random DNA amplicon fragmentation using the methylation-dependent restriction enzyme MspJI.
    Shinozuka H; Cogan NO; Shinozuka M; Marshall A; Kay P; Lin YH; Spangenberg GC; Forster JW
    BMC Biotechnol; 2015 Apr; 15():25. PubMed ID: 25887558
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Sample and Library Preparation for PacBio Long-Read Sequencing in Grapevine.
    Salava H; Deák T; Czepe C; Maghuly F
    Methods Mol Biol; 2024; 2787():183-197. PubMed ID: 38656490
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.
    Wang O; Chin R; Cheng X; Wu MKY; Mao Q; Tang J; Sun Y; Anderson E; Lam HK; Chen D; Zhou Y; Wang L; Fan F; Zou Y; Xie Y; Zhang RY; Drmanac S; Nguyen D; Xu C; Villarosa C; Gablenz S; Barua N; Nguyen S; Tian W; Liu JS; Wang J; Liu X; Qi X; Chen A; Wang H; Dong Y; Zhang W; Alexeev A; Yang H; Wang J; Kristiansen K; Xu X; Drmanac R; Peters BA
    Genome Res; 2019 May; 29(5):798-808. PubMed ID: 30940689
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Decoding Genetic Variations: Communications-Inspired Haplotype Assembly.
    Puljiz Z; Vikalo H
    IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(3):518-30. PubMed ID: 27295635
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TruSPAdes: barcode assembly of TruSeq synthetic long reads.
    Bankevich A; Pevzner PA
    Nat Methods; 2016 Mar; 13(3):248-50. PubMed ID: 26828418
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
    Amini S; Pushkarev D; Christiansen L; Kostem E; Royce T; Turk C; Pignatelli N; Adey A; Kitzman JO; Vijayan K; Ronaghi M; Shendure J; Gunderson KL; Steemers FJ
    Nat Genet; 2014 Dec; 46(12):1343-9. PubMed ID: 25326703
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
    Wenger AM; Peluso P; Rowell WJ; Chang PC; Hall RJ; Concepcion GT; Ebler J; Fungtammasan A; Kolesnikov A; Olson ND; Töpfer A; Alonge M; Mahmoud M; Qian Y; Chin CS; Phillippy AM; Schatz MC; Myers G; DePristo MA; Ruan J; Marschall T; Sedlazeck FJ; Zook JM; Li H; Koren S; Carroll A; Rank DR; Hunkapiller MW
    Nat Biotechnol; 2019 Oct; 37(10):1155-1162. PubMed ID: 31406327
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
    Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
    Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.
    Bansal V
    Methods Mol Biol; 2023; 2590():139-147. PubMed ID: 36335497
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
    Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
    Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.