154 related articles for article (PubMed ID: 26819408)
1. ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments.
Schwarz RF; Tamuri AU; Kultys M; King J; Godwin J; Florescu AM; Schultz J; Goldman N
Nucleic Acids Res; 2016 May; 44(8):e77. PubMed ID: 26819408
[TBL] [Abstract][Full Text] [Related]
2. STAMP: a web tool for exploring DNA-binding motif similarities.
Mahony S; Benos PV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W253-8. PubMed ID: 17478497
[TBL] [Abstract][Full Text] [Related]
3. Evolutionary Sequence Analysis and Visualization with Wasabi.
Veidenberg A; Löytynoja A
Methods Mol Biol; 2021; 2231():225-240. PubMed ID: 33289896
[TBL] [Abstract][Full Text] [Related]
4. ABC: software for interactive browsing of genomic multiple sequence alignment data.
Cooper GM; Singaravelu SA; Sidow A
BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
[TBL] [Abstract][Full Text] [Related]
5. Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.
Shih AC; Lee DT; Peng CL; Wu YW
BMC Bioinformatics; 2007 Feb; 8():63. PubMed ID: 17319966
[TBL] [Abstract][Full Text] [Related]
6. iMotifs: an integrated sequence motif visualization and analysis environment.
Piipari M; Down TA; Saini H; Enright A; Hubbard TJ
Bioinformatics; 2010 Mar; 26(6):843-4. PubMed ID: 20106815
[TBL] [Abstract][Full Text] [Related]
7. Colorstock, SScolor, Ratón: RNA alignment visualization tools.
Bendaña YR; Holmes IH
Bioinformatics; 2008 Feb; 24(4):579-80. PubMed ID: 18218657
[TBL] [Abstract][Full Text] [Related]
8. Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
Wheeler TJ; Clements J; Finn RD
BMC Bioinformatics; 2014 Jan; 15():7. PubMed ID: 24410852
[TBL] [Abstract][Full Text] [Related]
9. SplicePort--an interactive splice-site analysis tool.
Dogan RI; Getoor L; Wilbur WJ; Mount SM
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W285-91. PubMed ID: 17576680
[TBL] [Abstract][Full Text] [Related]
10. PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.
Hanekamp K; Bohnebeck U; Beszteri B; Valentin K
Bioinformatics; 2007 Apr; 23(7):793-801. PubMed ID: 17332025
[TBL] [Abstract][Full Text] [Related]
11. The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods.
Moretti S; Armougom F; Wallace IM; Higgins DG; Jongeneel CV; Notredame C
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W645-8. PubMed ID: 17526519
[TBL] [Abstract][Full Text] [Related]
12. MOP-UP: an online tool for finding strain-specific primers or motifs in DNA or protein alignments.
Underwood AP; Green J
Clin Microbiol Infect; 2004 Oct; 10(10):948-50. PubMed ID: 15373897
[TBL] [Abstract][Full Text] [Related]
13. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
14. Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off.
Dutheil JY; Figuet E
BMC Bioinformatics; 2015 Jun; 16():190. PubMed ID: 26055961
[TBL] [Abstract][Full Text] [Related]
15. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
[TBL] [Abstract][Full Text] [Related]
16. SCOPE: a web server for practical de novo motif discovery.
Carlson JM; Chakravarty A; DeZiel CE; Gross RH
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W259-64. PubMed ID: 17485471
[TBL] [Abstract][Full Text] [Related]
17. SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides.
Ho JW; Adams CE; Lew JB; Matthews TJ; Ng CC; Shahabi-Sirjani A; Tan LH; Zhao Y; Easteal S; Wilson SR; Jermiin LS
Bioinformatics; 2006 Sep; 22(17):2162-3. PubMed ID: 16766557
[TBL] [Abstract][Full Text] [Related]
18. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
Bininda-Emonds OR
BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
[TBL] [Abstract][Full Text] [Related]
19. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
20. MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
Tsai HK; Chou MY; Shih CH; Huang GT; Chang TH; Li WH
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W221-6. PubMed ID: 17537814
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
