411 related articles for article (PubMed ID: 26821742)
21. A tool for analyzing and visualizing ribo-seq data at the isoform level.
Wu WS; Tsao YH; Shiue SC; Chen TY; Tseng YY; Tseng JT
BMC Bioinformatics; 2021 May; 22(Suppl 10):271. PubMed ID: 34058988
[TBL] [Abstract][Full Text] [Related]
22. RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.
Li K; Hope CM; Wang XA; Wang JP
Nucleic Acids Res; 2020 Dec; 48(21):12016-12029. PubMed ID: 33211868
[TBL] [Abstract][Full Text] [Related]
23. Development of a ribosome profiling protocol to study translation in Kluyveromyces marxianus.
Fenton DA; Kiniry SJ; Yordanova MM; Baranov PV; Morrissey JP
FEMS Yeast Res; 2022 Jun; 22(1):. PubMed ID: 35521744
[TBL] [Abstract][Full Text] [Related]
24. Detecting translational regulation by change point analysis of ribosome profiling data sets.
Zupanic A; Meplan C; Grellscheid SN; Mathers JC; Kirkwood TB; Hesketh JE; Shanley DP
RNA; 2014 Oct; 20(10):1507-18. PubMed ID: 25147239
[TBL] [Abstract][Full Text] [Related]
25. TranslatomeDB: a comprehensive database and cloud-based analysis platform for translatome sequencing data.
Liu W; Xiang L; Zheng T; Jin J; Zhang G
Nucleic Acids Res; 2018 Jan; 46(D1):D206-D212. PubMed ID: 29106630
[TBL] [Abstract][Full Text] [Related]
26. RiboA: a web application to identify ribosome A-site locations in ribosome profiling data.
Shao D; Ahmed N; Soni N; O'Brien EP
BMC Bioinformatics; 2021 Mar; 22(1):156. PubMed ID: 33765913
[TBL] [Abstract][Full Text] [Related]
27. mQC: A post-mapping data exploration tool for ribosome profiling.
Verbruggen S; Menschaert G
Comput Methods Programs Biomed; 2019 Nov; 181():104806. PubMed ID: 30401579
[TBL] [Abstract][Full Text] [Related]
28. Bayesian prediction of RNA translation from ribosome profiling.
Malone B; Atanassov I; Aeschimann F; Li X; Großhans H; Dieterich C
Nucleic Acids Res; 2017 Apr; 45(6):2960-2972. PubMed ID: 28126919
[TBL] [Abstract][Full Text] [Related]
29. Ribosome profiling: a Hi-Def monitor for protein synthesis at the genome-wide scale.
Michel AM; Baranov PV
Wiley Interdiscip Rev RNA; 2013; 4(5):473-90. PubMed ID: 23696005
[TBL] [Abstract][Full Text] [Related]
30. [Ribosome profiling as an innovative tool to study the process of protein synthesis].
Kaźmierczak U; Kwaśniak-Owczarek M
Postepy Biochem; 2019 Mar; 65(1):41-51. PubMed ID: 30901182
[TBL] [Abstract][Full Text] [Related]
31. Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling.
Cope AL; Vellappan S; Favate JS; Skalenko KS; Yadavalli SS; Shah P
Methods Mol Biol; 2022; 2404():83-110. PubMed ID: 34694605
[TBL] [Abstract][Full Text] [Related]
32. Assessing Ribosome Distribution Along Transcripts with Polarity Scores and Regression Slope Estimates.
Vorontsov IE; Egorov AA; Anisimova AS; Eliseeva IA; Makeev VJ; Gladyshev VN; Dmitriev SE; Kulakovskiy IV
Methods Mol Biol; 2021; 2252():269-294. PubMed ID: 33765281
[TBL] [Abstract][Full Text] [Related]
33. Studying Selenoprotein mRNA Translation Using RNA-Seq and Ribosome Profiling.
Dalley BK; Baird L; Howard MT
Methods Mol Biol; 2018; 1661():103-123. PubMed ID: 28917040
[TBL] [Abstract][Full Text] [Related]
34. deltaTE: Detection of Translationally Regulated Genes by Integrative Analysis of Ribo-seq and RNA-seq Data.
Chothani S; Adami E; Ouyang JF; Viswanathan S; Hubner N; Cook SA; Schafer S; Rackham OJL
Curr Protoc Mol Biol; 2019 Dec; 129(1):e108. PubMed ID: 31763789
[TBL] [Abstract][Full Text] [Related]
35. Beyond Read-Counts: Ribo-seq Data Analysis to Understand the Functions of the Transcriptome.
Calviello L; Ohler U
Trends Genet; 2017 Oct; 33(10):728-744. PubMed ID: 28887026
[TBL] [Abstract][Full Text] [Related]
36. Analysis of Ribosome Profiling Data.
Legrand C; Duc KD; Tuorto F
Methods Mol Biol; 2022; 2428():133-156. PubMed ID: 35171478
[TBL] [Abstract][Full Text] [Related]
37. Translation complex profile sequencing to study the in vivo dynamics of mRNA-ribosome interactions during translation initiation, elongation and termination.
Shirokikh NE; Archer SK; Beilharz TH; Powell D; Preiss T
Nat Protoc; 2017 Apr; 12(4):697-731. PubMed ID: 28253237
[TBL] [Abstract][Full Text] [Related]
38. Multimapping confounds ribosome profiling analysis: A case-study of the Hsp90 molecular chaperone.
Halpin JC; Jangi R; Street TO
Proteins; 2020 Jan; 88(1):57-68. PubMed ID: 31254414
[TBL] [Abstract][Full Text] [Related]
39. riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.
Cope AL; Anderson F; Favate J; Jackson M; Mok A; Kurowska A; Liu J; MacKenzie E; Shivakumar V; Tilton P; Winterbourne SM; Xue S; Kavoussanakis K; Lareau LF; Shah P; Wallace EWJ
Bioinformatics; 2022 Apr; 38(8):2358-2360. PubMed ID: 35157051
[TBL] [Abstract][Full Text] [Related]
40. Tracing Translational Footprint by Ribo-Seq: Principle, Workflow, and Applications to Understand the Mechanism of Human Diseases.
Bagheri A; Astafev A; Al-Hashimy T; Jiang P
Cells; 2022 Sep; 11(19):. PubMed ID: 36230928
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
