These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

243 related articles for article (PubMed ID: 26828591)

  • 1. PSAMM: A Portable System for the Analysis of Metabolic Models.
    Steffensen JL; Dufault-Thompson K; Zhang Y
    PLoS Comput Biol; 2016 Feb; 12(2):e1004732. PubMed ID: 26828591
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using PSAMM for the Curation and Analysis of Genome-Scale Metabolic Models.
    Dufault-Thompson K; Steffensen JL; Zhang Y
    Methods Mol Biol; 2018; 1716():131-150. PubMed ID: 29222752
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ReMatch: a web-based tool to construct, store and share stoichiometric metabolic models with carbon maps for metabolic flux analysis.
    Pitkänen E; Akerlund A; Rantanen A; Jouhten P; Ukkonen E
    J Integr Bioinform; 2008 Aug; 5(2):. PubMed ID: 20134058
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ModelExplorer - software for visual inspection and inconsistency correction of genome-scale metabolic reconstructions.
    Martyushenko N; Almaas E
    BMC Bioinformatics; 2019 Jan; 20(1):56. PubMed ID: 30691403
    [TBL] [Abstract][Full Text] [Related]  

  • 5. OptFlux: an open-source software platform for in silico metabolic engineering.
    Rocha I; Maia P; Evangelista P; Vilaça P; Soares S; Pinto JP; Nielsen J; Patil KR; Ferreira EC; Rocha M
    BMC Syst Biol; 2010 Apr; 4():45. PubMed ID: 20403172
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.
    Becker SA; Feist AM; Mo ML; Hannum G; Palsson BØ; Herrgard MJ
    Nat Protoc; 2007; 2(3):727-38. PubMed ID: 17406635
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MetaNET--a web-accessible interactive platform for biological metabolic network analysis.
    Narang P; Khan S; Hemrom AJ; ; Lynn AM
    BMC Syst Biol; 2014; 8():130. PubMed ID: 25779921
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Use of CellNetAnalyzer in biotechnology and metabolic engineering.
    von Kamp A; Thiele S; Hädicke O; Klamt S
    J Biotechnol; 2017 Nov; 261():221-228. PubMed ID: 28499817
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data.
    Carreira R; Evangelista P; Maia P; Vilaça P; Pont M; Tomb JF; Rocha I; Rocha M
    BMC Syst Biol; 2014 Dec; 8():123. PubMed ID: 25466481
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Using flux balance analysis to guide microbial metabolic engineering.
    Curran KA; Crook NC; Alper HS
    Methods Mol Biol; 2012; 834():197-216. PubMed ID: 22144361
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.
    Gevorgyan A; Bushell ME; Avignone-Rossa C; Kierzek AM
    Bioinformatics; 2011 Feb; 27(3):433-4. PubMed ID: 21148545
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.
    Schmidt R; Waschina S; Boettger-Schmidt D; Kost C; Kaleta C
    Bioinformatics; 2015 Feb; 31(3):373-81. PubMed ID: 25286919
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MrBac: a web server for draft metabolic network reconstructions for bacteria.
    Liao YC; Chen JC; Tsai MH; Tang YH; Chen FC; Hsiung CA
    Bioeng Bugs; 2011; 2(5):284-7. PubMed ID: 22008641
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.
    Durot M; Le Fèvre F; de Berardinis V; Kreimeyer A; Vallenet D; Combe C; Smidtas S; Salanoubat M; Weissenbach J; Schachter V
    BMC Syst Biol; 2008 Oct; 2():85. PubMed ID: 18840283
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MicrobesFlux: a web platform for drafting metabolic models from the KEGG database.
    Feng X; Xu Y; Chen Y; Tang YJ
    BMC Syst Biol; 2012 Aug; 6():94. PubMed ID: 22857267
    [TBL] [Abstract][Full Text] [Related]  

  • 16. FindPath: a Matlab solution for in silico design of synthetic metabolic pathways.
    Vieira G; Carnicer M; Portais JC; Heux S
    Bioinformatics; 2014 Oct; 30(20):2986-8. PubMed ID: 24994891
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ORCA: a COBRA toolbox extension for model-driven discovery and analysis.
    Mao L; Verwoerd WS
    Bioinformatics; 2014 Feb; 30(4):584-5. PubMed ID: 24336807
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The MONGOOSE Rational Arithmetic Toolbox.
    Le C; Chindelevitch L
    Methods Mol Biol; 2018; 1716():77-99. PubMed ID: 29222749
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FBA-SimVis: interactive visualization of constraint-based metabolic models.
    Grafahrend-Belau E; Klukas C; Junker BH; Schreiber F
    Bioinformatics; 2009 Oct; 25(20):2755-7. PubMed ID: 19578041
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Integration of Comparative Genomics with Genome-Scale Metabolic Modeling to Investigate Strain-Specific Phenotypical Differences.
    Monk J; Bosi E
    Methods Mol Biol; 2018; 1716():151-175. PubMed ID: 29222753
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.