767 related articles for article (PubMed ID: 26829319)
1. Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.
Zheng GX; Lau BT; Schnall-Levin M; Jarosz M; Bell JM; Hindson CM; Kyriazopoulou-Panagiotopoulou S; Masquelier DA; Merrill L; Terry JM; Mudivarti PA; Wyatt PW; Bharadwaj R; Makarewicz AJ; Li Y; Belgrader P; Price AD; Lowe AJ; Marks P; Vurens GM; Hardenbol P; Montesclaros L; Luo M; Greenfield L; Wong A; Birch DE; Short SW; Bjornson KP; Patel P; Hopmans ES; Wood C; Kaur S; Lockwood GK; Stafford D; Delaney JP; Wu I; Ordonez HS; Grimes SM; Greer S; Lee JY; Belhocine K; Giorda KM; Heaton WH; McDermott GP; Bent ZW; Meschi F; Kondov NO; Wilson R; Bernate JA; Gauby S; Kindwall A; Bermejo C; Fehr AN; Chan A; Saxonov S; Ness KD; Hindson BJ; Ji HP
Nat Biotechnol; 2016 Mar; 34(3):303-11. PubMed ID: 26829319
[TBL] [Abstract][Full Text] [Related]
2. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
[TBL] [Abstract][Full Text] [Related]
3. Ultraaccurate genome sequencing and haplotyping of single human cells.
Chu WK; Edge P; Lee HS; Bansal V; Bafna V; Huang X; Zhang K
Proc Natl Acad Sci U S A; 2017 Nov; 114(47):12512-12517. PubMed ID: 29078313
[TBL] [Abstract][Full Text] [Related]
4. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
[TBL] [Abstract][Full Text] [Related]
5. Linked read sequencing resolves complex genomic rearrangements in gastric cancer metastases.
Greer SU; Nadauld LD; Lau BT; Chen J; Wood-Bouwens C; Ford JM; Kuo CJ; Ji HP
Genome Med; 2017 Jun; 9(1):57. PubMed ID: 28629429
[TBL] [Abstract][Full Text] [Related]
6. Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
Stapleton JA; Kim J; Hamilton JP; Wu M; Irber LC; Maddamsetti R; Briney B; Newton L; Burton DR; Brown CT; Chan C; Buell CR; Whitehead TA
PLoS One; 2016; 11(1):e0147229. PubMed ID: 26789840
[TBL] [Abstract][Full Text] [Related]
7. Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes.
Shin G; Greer SU; Xia LC; Lee H; Zhou J; Boles TC; Ji HP
Nucleic Acids Res; 2019 Nov; 47(19):e115. PubMed ID: 31350896
[TBL] [Abstract][Full Text] [Related]
8. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
[TBL] [Abstract][Full Text] [Related]
9. The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes.
Mao Q; Ciotlos S; Zhang RY; Ball MP; Chin R; Carnevali P; Barua N; Nguyen S; Agarwal MR; Clegg T; Connelly A; Vandewege W; Zaranek AW; Estep PW; Church GM; Drmanac R; Peters BA
Gigascience; 2016 Oct; 5(1):42. PubMed ID: 27724973
[TBL] [Abstract][Full Text] [Related]
10. Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
[TBL] [Abstract][Full Text] [Related]
11. Whole-genome haplotyping by dilution, amplification, and sequencing.
Kaper F; Swamy S; Klotzle B; Munchel S; Cottrell J; Bibikova M; Chuang HY; Kruglyak S; Ronaghi M; Eberle MA; Fan JB
Proc Natl Acad Sci U S A; 2013 Apr; 110(14):5552-7. PubMed ID: 23509297
[TBL] [Abstract][Full Text] [Related]
12. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Edge P; Bansal V
Nat Commun; 2019 Oct; 10(1):4660. PubMed ID: 31604920
[TBL] [Abstract][Full Text] [Related]
13. Accurate Sequencing and Haplotyping from 10 Cells Using Long Fragment Read (LFR) Technology.
McElwain MA; Peters BA
Methods Mol Biol; 2023; 2590():71-84. PubMed ID: 36335493
[TBL] [Abstract][Full Text] [Related]
14. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.
Patel A; Edge P; Selvaraj S; Bansal V; Bafna V
Nucleic Acids Res; 2016 Jul; 44(12):e111. PubMed ID: 27105843
[TBL] [Abstract][Full Text] [Related]
15. Whole-genome haplotyping using long reads and statistical methods.
Kuleshov V; Xie D; Chen R; Pushkarev D; Ma Z; Blauwkamp T; Kertesz M; Snyder M
Nat Biotechnol; 2014 Mar; 32(3):261-266. PubMed ID: 24561555
[TBL] [Abstract][Full Text] [Related]
16. Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping.
McElwain MA; Zhang RY; Drmanac R; Peters BA
Methods Mol Biol; 2017; 1551():191-205. PubMed ID: 28138848
[TBL] [Abstract][Full Text] [Related]
17. Universal Haplotype-Based Noninvasive Prenatal Testing for Single Gene Diseases.
Hui WW; Jiang P; Tong YK; Lee WS; Cheng YK; New MI; Kadir RA; Chan KC; Leung TY; Lo YM; Chiu RW
Clin Chem; 2017 Feb; 63(2):513-524. PubMed ID: 27932412
[TBL] [Abstract][Full Text] [Related]
18. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
Bansal V
Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
[TBL] [Abstract][Full Text] [Related]
19. Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.
Amini S; Pushkarev D; Christiansen L; Kostem E; Royce T; Turk C; Pignatelli N; Adey A; Kitzman JO; Vijayan K; Ronaghi M; Shendure J; Gunderson KL; Steemers FJ
Nat Genet; 2014 Dec; 46(12):1343-9. PubMed ID: 25326703
[TBL] [Abstract][Full Text] [Related]
20. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]