These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 26833346)

  • 1. Optimization of alignment-based methods for taxonomic binning of metagenomics reads.
    Jaillard M; Tournoud M; Meynier F; Veyrieras JB
    Bioinformatics; 2016 Jun; 32(12):1779-87. PubMed ID: 26833346
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 3. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge.
    Lu YY; Chen T; Fuhrman JA; Sun F
    Bioinformatics; 2017 Mar; 33(6):791-798. PubMed ID: 27256312
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MetaBCC-LR: metagenomics binning by coverage and composition for long reads.
    Wickramarachchi A; Mallawaarachchi V; Rajan V; Lin Y
    Bioinformatics; 2020 Jul; 36(Suppl_1):i3-i11. PubMed ID: 32657364
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A scalable assembly-free variable selection algorithm for biomarker discovery from metagenomes.
    Gkanogiannis A; Gazut S; Salanoubat M; Kanj S; Brüls T
    BMC Bioinformatics; 2016 Aug; 17(1):311. PubMed ID: 27542753
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CoCoNet: an efficient deep learning tool for viral metagenome binning.
    Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
    Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SolidBin: improving metagenome binning with semi-supervised normalized cut.
    Wang Z; Wang Z; Lu YY; Sun F; Zhu S
    Bioinformatics; 2019 Nov; 35(21):4229-4238. PubMed ID: 30977806
    [TBL] [Abstract][Full Text] [Related]  

  • 9. MetaProb: accurate metagenomic reads binning based on probabilistic sequence signatures.
    Girotto S; Pizzi C; Comin M
    Bioinformatics; 2016 Sep; 32(17):i567-i575. PubMed ID: 27587676
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A theoretical analysis of taxonomic binning accuracy.
    De Sanctis B; Money D; Pedersen MW; Durbin R
    Mol Ecol Resour; 2022 Aug; 22(6):2208-2219. PubMed ID: 35285150
    [TBL] [Abstract][Full Text] [Related]  

  • 11. From defaults to databases: parameter and database choice dramatically impact the performance of metagenomic taxonomic classification tools.
    Wright RJ; Comeau AM; Langille MGI
    Microb Genom; 2023 Mar; 9(3):. PubMed ID: 36867161
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.
    Monzoorul Haque M; Ghosh TS; Komanduri D; Mande SS
    Bioinformatics; 2009 Jul; 25(14):1722-30. PubMed ID: 19439565
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Large scale microbiome profiling in the cloud.
    Valdes C; Stebliankin V; Narasimhan G
    Bioinformatics; 2019 Jul; 35(14):i13-i22. PubMed ID: 31510682
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DIAMOND +  MEGAN Microbiome Analysis.
    Gautam A; Zeng W; Huson DH
    Methods Mol Biol; 2023; 2649():107-131. PubMed ID: 37258860
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Flexible metagenome analysis using the MGX framework.
    Jaenicke S; Albaum SP; Blumenkamp P; Linke B; Stoye J; Goesmann A
    Microbiome; 2018 Apr; 6(1):76. PubMed ID: 29690922
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BugSplit enables genome-resolved metagenomics through highly accurate taxonomic binning of metagenomic assemblies.
    Chandrakumar I; Gauthier NPG; Nelson C; Bonsall MB; Locher K; Charles M; MacDonald C; Krajden M; Manges AR; Chorlton SD
    Commun Biol; 2022 Feb; 5(1):151. PubMed ID: 35194141
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
    Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
    Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exploiting topic modeling to boost metagenomic reads binning.
    Zhang R; Cheng Z; Guan J; Zhou S
    BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Metagenomic binning through low-density hashing.
    Luo Y; Yu YW; Zeng J; Berger B; Peng J
    Bioinformatics; 2019 Jan; 35(2):219-226. PubMed ID: 30010790
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.