92 related articles for article (PubMed ID: 26834993)
21. Non-referenced genome assembly from epigenomic short-read data.
Kaspi A; Ziemann M; Keating ST; Khurana I; Connor T; Spolding B; Cooper A; Lazarus R; Walder K; Zimmet P; El-Osta A
Epigenetics; 2014 Oct; 9(10):1329-38. PubMed ID: 25437048
[TBL] [Abstract][Full Text] [Related]
22. Optimizing detection of transcription factor-binding sites in ChIP-seq experiments.
Kallio A; Elo LL
Methods Mol Biol; 2013; 1038():181-91. PubMed ID: 23872976
[TBL] [Abstract][Full Text] [Related]
23. Pasha: a versatile R package for piling chromatin HTS data.
Fenouil R; Descostes N; Spinelli L; Koch F; Maqbool MA; Benoukraf T; Cauchy P; Innocenti C; Ferrier P; Andrau JC
Bioinformatics; 2016 Aug; 32(16):2528-30. PubMed ID: 27153642
[TBL] [Abstract][Full Text] [Related]
24. BRGenomics for analyzing high-resolution genomics data in R.
DeBerardine M
Bioinformatics; 2023 Jun; 39(6):. PubMed ID: 37208173
[TBL] [Abstract][Full Text] [Related]
25. diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
Lun AT; Smyth GK
BMC Bioinformatics; 2015 Aug; 16():258. PubMed ID: 26283514
[TBL] [Abstract][Full Text] [Related]
26. GenomicDistributions: fast analysis of genomic intervals with Bioconductor.
Kupkova K; Mosquera JV; Smith JP; Stolarczyk M; Danehy TL; Lawson JT; Xue B; Stubbs JT; LeRoy N; Sheffield NC
BMC Genomics; 2022 Apr; 23(1):299. PubMed ID: 35413804
[TBL] [Abstract][Full Text] [Related]
27. Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.
Brdlik CM; Niu W; Snyder M
Methods Enzymol; 2014; 539():89-111. PubMed ID: 24581441
[TBL] [Abstract][Full Text] [Related]
28. Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).
Soyer JL; Möller M; Schotanus K; Connolly LR; Galazka JM; Freitag M; Stukenbrock EH
Fungal Genet Biol; 2015 Jun; 79():63-70. PubMed ID: 25857259
[TBL] [Abstract][Full Text] [Related]
29. Defining bacterial regulons using ChIP-seq.
Myers KS; Park DM; Beauchene NA; Kiley PJ
Methods; 2015 Sep; 86():80-8. PubMed ID: 26032817
[TBL] [Abstract][Full Text] [Related]
30. ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions.
Muiño JM; Kaufmann K; van Ham RC; Angenent GC; Krajewski P
Plant Methods; 2011 May; 7():11. PubMed ID: 21554688
[TBL] [Abstract][Full Text] [Related]
31. Association rule mining to identify transcription factor interactions in genomic regions.
Ceddia G; Martino LN; Parodi A; Secchi P; Campaner S; Masseroli M
Bioinformatics; 2020 Feb; 36(4):1007-1013. PubMed ID: 31504203
[TBL] [Abstract][Full Text] [Related]
32. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
McCarthy DJ; Chen Y; Smyth GK
Nucleic Acids Res; 2012 May; 40(10):4288-97. PubMed ID: 22287627
[TBL] [Abstract][Full Text] [Related]
33. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW; Alhamdoosh M; Su S; Dong X; Tian L; Smyth GK; Ritchie ME
F1000Res; 2016; 5():. PubMed ID: 27441086
[TBL] [Abstract][Full Text] [Related]
34. A Computational Pipeline for Cross-Species Analysis of RNA-seq Data Using R and Bioconductor.
LoVerso PR; Cui F
Bioinform Biol Insights; 2015; 9():165-74. PubMed ID: 26692761
[TBL] [Abstract][Full Text] [Related]
35. recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor.
Collado-Torres L; Nellore A; Jaffe AE
F1000Res; 2017; 6():1558. PubMed ID: 29043067
[TBL] [Abstract][Full Text] [Related]
36. Identifying differential transcription factor binding in ChIP-seq.
Wu DY; Bittencourt D; Stallcup MR; Siegmund KD
Front Genet; 2015; 6():169. PubMed ID: 25972895
[TBL] [Abstract][Full Text] [Related]
37. SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis.
Ather SH; Awe OI; Butler TJ; Denka T; Semick SA; Tang W; Busby B
F1000Res; 2018; 7():. PubMed ID: 33014338
[TBL] [Abstract][Full Text] [Related]
38. nf-rnaSeqCount: A Nextflow pipeline for obtaining raw read counts from RNA-seq data.
Mpangase PT; Frost J; Tikly M; Ramsay M; Hazelhurst S
S Afr Comput J; 2021 Dec; 33(2):. PubMed ID: 35574063
[TBL] [Abstract][Full Text] [Related]
39.
Silva TC; Colaprico A; Olsen C; D'Angelo F; Bontempi G; Ceccarelli M; Noushmehr H
F1000Res; 2016; 5():1542. PubMed ID: 28232861
[TBL] [Abstract][Full Text] [Related]
40. Fluent genomics with
Lee S; Lawrence M; Love MI
F1000Res; 2020; 9():109. PubMed ID: 32528659
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]